PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.23250s0004.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family NAC
Protein Properties Length: 221aa    MW: 25287.6 Da    PI: 5.8914
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.23250s0004.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM34.75.3e-1152100148
                   NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLp 48 
                           lp+G++F Ptde++v +yLk+ + g+  + + v i+ vdiyk++P++L 
  Araha.23250s0004.1.p  52 LPVGCKFAPTDEDIVLHYLKPYLLGNLYSWFPVsIHCVDIYKSNPNQLS 100
                           799************************9998888*************96 PP
2NAM50.37.9e-1610115870128
                   NAM  70 tgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                            g+r nr  + gyWk  g+ k++++ ++ lvg k  L +y g++p+g+k dW+mhey l
  Araha.23250s0004.1.p 101 GGQRMNRRDNGGYWKVLGSAKKIYV-GEGLVGYKYALDYYVGKHPNGVKGDWLMHEYWL 158
                           589****99****************.999****************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.66E-3839179IPR003441NAC domain
PROSITE profilePS5100524.49452179IPR003441NAC domain
PfamPF023652.0E-1453157IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MRLNDSYSQV RKQIIMMDPF PDDFNTIYNF ISQAEQQKHS FAFSAPRQAP LLPVGCKFAP  60
TDEDIVLHYL KPYLLGNLYS WFPVSIHCVD IYKSNPNQLS GGQRMNRRDN GGYWKVLGSA  120
KKIYVGEGLV GYKYALDYYV GKHPNGVKGD WLMHEYWLES SADINNEMGN HALCKIYLTP  180
QAAKKKKAHD EEIEKQKKDE DDLVQFVEAA LEDVDEPNID *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A5e-175218520174NAC domain-containing protein 19
3swm_B5e-175218520174NAC domain-containing protein 19
3swm_C5e-175218520174NAC domain-containing protein 19
3swm_D5e-175218520174NAC domain-containing protein 19
3swp_A5e-175218520174NAC domain-containing protein 19
3swp_B5e-175218520174NAC domain-containing protein 19
3swp_C5e-175218520174NAC domain-containing protein 19
3swp_D5e-175218520174NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.23250s0004.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0003813e-45AP000381.1 Arabidopsis thaliana genomic DNA, chromosome 3, TAC clone:K17E12.
GenBankCP0026863e-45CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002878093.14e-45NAC transcription factor 29
TrEMBLD7LVH11e-43D7LVH1_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.5__2087__AT3G56530.12e-44(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM27931563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56530.13e-45NAC domain containing protein 64