PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araha.23250s0005.1.p

Organism

Arabidopsis halleri

Taxonomic ID

81970

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

NAC

Protein Properties

Length: 195aa MW: 23183.1 Da PI: 4.9382

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araha.23250s0005.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	55.1	2.6e-17	8	125	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 lp Gf+F+P+ e+ +++Lkkk+ g+++ + +v +e+ di++ +P+dLp +e++wy+F+++++++ +t W g+ Araha.23250s0005.1.p 8 LPIGFKFRPSKFEMANNFLKKKAFGQPIIARRVPEEChDIFSRHPRDLPGY--PREEHWYYFCRKRNHQ--------VT-CNLWTPIGE 85 699**********************99989999989*******43..4789**986654........33.368** PP NAM 89 dkevlskkgel..vglkktLvfykgrapkgektdWvmheyrl 128 +++vl k+++ v +++ +++ +++++ e+ dW+++e +l Araha.23250s0005.1.p 86 ETNVLYPKNRQlvVATRRRFTLVEKDEE--EEYDWFLDEISL 125 *98555434889999999865554..59****9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	7.32E-22	7	142	IPR003441	NAC domain
PROSITE profile	PS51005	24.512	8	142	IPR003441	NAC domain
Pfam	PF02365	1.0E-8	9	124	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 195 aa Download sequence Send to blast
MEPIYRPLPI GFKFRPSKFE MANNFLKKKA FGQPIIARRV PEECHDIFSR HPRDLPGYPR 60 EEHWYYFCRK RNHQVTCNLW TPIGEETNVL YPKNRQLVVA TRRRFTLVEK DEEEEYDWFL 120 DEISLRQTVS FSDWVFCHIK GKKIKPEFDY LPINESESES ESEDEENVDN NPAEILDLLR 180 EQDENVLPPP PPSP*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araha.23250s0005.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002877033.1	1e-123	NAC domain-containing protein 104
TrEMBL	D7LLY9	1e-121	D7LLY9_ARALL; Uncharacterized protein
STRING	scaffold_500654.1	1e-122	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8604	17	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56520.1	1e-73	NAC family protein

Link Out ? help Back to Top
Phytozome	Araha.23250s0005.1.p