PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.23363s0002.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ERF
Protein Properties Length: 326aa    MW: 35661.7 Da    PI: 4.3837
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.23363s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.82.3e-17116162252
                   AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkk 52 
                           +  GVr++k +g+W+AeIr+p     + +r +lg+f+t eeAaka++a + +
  Araha.23363s0002.1.p 116 KPVGVRQRK-WGKWAAEIRHPI----KkTRTWLGTFDTLEEAAKAYDAKKIE 162
                           789*****9.**********72....35********************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.70E-22115163No hitNo description
PROSITE profilePS5103219.151116175IPR001471AP2/ERF domain
PfamPF008475.0E-12116163IPR001471AP2/ERF domain
SMARTSM003802.6E-18116179IPR001471AP2/ERF domain
PRINTSPR003671.7E-7117128IPR001471AP2/ERF domain
SuperFamilySSF541712.42E-16118163IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.9E-22119163IPR001471AP2/ERF domain
PRINTSPR003671.7E-7139155IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MVEVRKEQSL SGTSSEIKKR AKRNTVSSSL PQETQPLRKV RIIVNDPYAT DDSSSDEEEL  60
KVSKVRKMKR IVREINFPSM EVSEQPSESS SQDSTKTVSK KAVSASPACP GLLTKKPVGV  120
RQRKWGKWAA EIRHPIKKTR TWLGTFDTLE EAAKAYDAKK IEFDALVASL SGNVSTKTVV  180
SSSETSQCSR SSPVVPVEQD DTSASALTCV NPDDVSVAPT PNAPAGGNKE VLFDFDFTDL  240
QIPDLGFFAE EQHDLDFDCF LSDDQFDDFG LLDDIQGFED NGPSELPDFD FADVEELQLA  300
DSSFGFLDQL APLNISCPLK SFAAS*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00217DAPTransfer from AT1G68550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.23363s0002.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0119150.0AC011915.5 Arabidopsis thaliana chromosome 1 BAC T26J14 genomic sequence, complete sequence.
GenBankAY0597820.0AY059782.1 Arabidopsis thaliana putative AP2 domain transcription factor (At1g68550) mRNA, complete cds.
GenBankAY0913030.0AY091303.1 Arabidopsis thaliana putative AP2 domain transcription factor (At1g68550) mRNA, complete cds.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020890585.10.0ethylene-responsive transcription factor ERF118
SwissprotQ9CA270.0EF118_ARATH; Ethylene-responsive transcription factor ERF118
TrEMBLD7KWD50.0D7KWD5_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.2__1107__AT1G68550.20.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25372671
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.21e-157ERF family protein
Publications ? help Back to Top
  1. Tran MK,Schultz CJ,Baumann U
    Conserved upstream open reading frames in higher plants.
    BMC Genomics, 2008. 9: p. 361
    [PMID:18667093]