PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araha.23420s0005.1.p

Organism

Arabidopsis halleri

Taxonomic ID

81970

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

bHLH

Protein Properties

Length: 314aa MW: 34904.4 Da PI: 6.2691

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araha.23420s0005.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	46.8	5.4e-15	111	162	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ Lr+l+P++ + ++ + a+i+ A+++Ik+L+ Araha.23420s0005.1.p 111 QRMTHIAVERNRRRQMNEHLNSLRSLMPPS---YIQRGDQASIVGGAIDFIKELE 162 79**************************...9****************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	3.08E-13	109	166	No hit	No description
SuperFamily	SSF47459	6.41E-17	110	175	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	16.145	110	161	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.6E-12	111	162	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.3E-14	111	173	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.3E-12	116	167	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 314 aa Download sequence Send to blast
MGGLMRFGEL GEQFGQISET TIEEKIPFLQ MLQCIEHPYT EPNQFLQSLL QIQTLESNSC 60 LTLETSIKRD PGQTDDPEKD PRTETGAATV KEKRKRKSTR APKNKDEVEK QRMTHIAVER 120 NRRRQMNEHL NSLRSLMPPS YIQRGDQASI VGGAIDFIKE LEQLLQSLEA EKRNDGTNET 180 PKTASCSSSS SRACTNSSVS SVSTTSEDGF TARFGGGETA EVEATVIQNH VSLKVRCKRG 240 KGQILKAIVS IEELKLAILH LTISSSYDFV IYSFNLKIED GCKLGSADEI ATTVHQIFEQ 300 INGEVMWSNL SRT*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	111	122	RMTHIAVERNRR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araha.23420s0005.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by heat treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY099780	0.0	AY099780.1 Arabidopsis thaliana putative bHLH DNA-binding protein (At4g01460) mRNA, complete cds.
GenBank	AY128881	0.0	AY128881.1 Arabidopsis thaliana putative bHLH DNA-binding protein (At4g01460) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002874978.1	0.0	transcription factor bHLH57
Swissprot	Q9M128	0.0	BH057_ARATH; Transcription factor bHLH57
TrEMBL	D7M4V3	0.0	D7M4V3_ARALL; Basic helix-loop-helix family protein
STRING	fgenesh1_pm.C_scaffold_6002861	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14696	17	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G01460.1	1e-179	bHLH family protein

Link Out ? help Back to Top
Phytozome	Araha.23420s0005.1.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]