PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araha.2350s0005.1.p

Organism

Arabidopsis halleri

Taxonomic ID

81970

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

Trihelix

Protein Properties

Length: 253aa MW: 28489 Da PI: 6.803

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araha.2350s0005.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	53.8	5e-17	1	52	34	85
trihelix 34 vskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 vs+++r++g++r+p+qC+++w+nl+++ykkike+e++ ++e++s +++ +++ Araha.2350s0005.1.p 1 VSSYCRRHGVNRGPVQCRKRWSNLAGDYKKIKEWESQIKEETESYWVMRNDV 52 89********************************************999886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.7E-7	1	49	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0050777	Biological Process	negative regulation of immune response
GO:0071219	Biological Process	cellular response to molecule of bacterial origin
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0042803	Molecular Function	protein homodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 253 aa Download sequence Send to blast
VSSYCRRHGV NRGPVQCRKR WSNLAGDYKK IKEWESQIKE ETESYWVMRN DVRREKKLPG 60 FFDKEVYDIV DGGVIPPAVP VLSLGLAPAS EEGLLSDLDR RESVRSPEKL NSTPVAKSVT 120 DVIDKEKQEA CGADQGRVKE KHPEAANVEG GSTSQEERKR KRMEGGSTSQ EERKRKRTSF 180 GEKEEEEEGE TKNMQSQLIE ILERNGQLLA AQLEVQNLNL KLDREQRKDH GDSLVAVLNK 240 LADAVAKIAD KM*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	159	176	RKRMEGGSTSQEERKRKR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor that binds DNA and plays a negative role in regulating microbe-associated molecular patterns-(MAMPs, e.g. flg22, elf18, chitin, and LPS) triggered immunity (PTI) by negatively regulating immune gene expression. {ECO:0000269\|PubMed:25770109}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00288	DAP	Transfer from AT2G33550	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araha.2350s0005.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY065364	0.0	AY065364.1 Arabidopsis thaliana unknown protein (At2g33550) mRNA, complete cds.
GenBank	AY096389	0.0	AY096389.1 Arabidopsis thaliana unknown protein (At2g33550) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002881288.1	1e-155	trihelix transcription factor ASR3 isoform X1
Swissprot	Q8VZ20	1e-148	ASR3_ARATH; Trihelix transcription factor ASR3
TrEMBL	D7LGB5	1e-154	D7LGB5_ARALL; Uncharacterized protein
STRING	scaffold_401930.1	1e-155	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6557	28	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	1e-150	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Araha.2350s0005.1.p

Publications ? help Back to Top
Vidal EA, et al. Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots. BMC Genomics, 2013. 14: p. 701 [PMID:24119003] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]