PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.23593s0003.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family B3
Protein Properties Length: 102aa    MW: 11686.7 Da    PI: 10.2254
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.23593s0003.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B331.53.1e-10896289
                          EEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                    B3  2 fkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86
                          +k+l+  d +++g+l lpk  +e++       ++ ++++++ ++d +++s+ v+l  +k++ +y +++GW +  +a gL++gD++ ++ ++
  Araha.23593s0003.1.p  8 EKTLKDCDLSRRGCLFLPKAKIENIlrttgiTLP-RNGIQVEIQD-NSKSYWVNL--KKHGVGYHIGTGWTNIRDARGLQTGDIIKLYWKD 94
                          6888899999************888999876443.5778899888.557777***..*****************************99543 PP

                          SSE CS
                    B3 87 rse 89
                           ++
  Araha.23593s0003.1.p 95 -TK 96
                          .44 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.16E-14396IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.8E-10394IPR015300DNA-binding pseudobarrel domain
CDDcd100171.80E-96101No hitNo description
SMARTSM010190.00167101IPR003340B3 DNA binding domain
PfamPF023626.8E-8897IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 102 aa     Download sequence    Send to blast
MDPKMMIEKT LKDCDLSRRG CLFLPKAKIE NILRTTGITL PRNGIQVEIQ DNSKSYWVNL  60
KKHGVGYHIG TGWTNIRDAR GLQTGDIIKL YWKDTKFIFT M*
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.23593s0003.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2373331e-156AC237333.1 Arabidopsis lyrata clone JGIFAFI-61E14, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020867663.13e-67B3 domain-containing protein At1g08985
SwissprotQ8GWU14e-41Y1898_ARATH; B3 domain-containing protein At1g08985
TrEMBLD7KYM63e-43D7KYM6_ARALL; Uncharacterized protein
TrEMBLR0HES12e-43R0HES1_9BRAS; Uncharacterized protein
STRINGscaffold_200822.15e-44(Arabidopsis lyrata)
STRINGXP_006289390.13e-44(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM141701218
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08985.12e-43B3 family protein