PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.23688s0002.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bHLH
Protein Properties Length: 204aa    MW: 22338.4 Da    PI: 9.757
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.23688s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.63.3e-1693139455
                           HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            hn  E++RR++iN+++  L++l+P++      K +Ka++L +A+eY+k+Lq
  Araha.23688s0002.1.p  93 FHNLSEKKRRSKINEKMKALQKLIPNS-----NKTDKASMLDEAIEYLKQLQ 139
                           6*************************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.97789138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-1393139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-1993146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-1993159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.07E-1694143No hitNo description
SMARTSM003534.2E-1895144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010047Biological Processfruit dehiscence
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MGDSDVGDRL PPPSSSDELS SFLRQILSRT PTAHPSSPPK RNVSPAENFF PSVSGGAVSV  60
AGYGVAQEKY AFENKRNGAK QRNSSKRSID AQFHNLSEKK RRSKINEKMK ALQKLIPNSN  120
KTDKASMLDE AIEYLKQLQL QVQTLAVMNG LGLNPMRLPP LLPPRINETL EQDLNLETLL  180
AAPHSLEPLQ ASQDMCFSTA TLL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
198103KKRRSK
Functional Description ? help Back to Top
Source Description
UniProtRequired for the dehiscence of fruit, especially for the separation of the valve cells from the replum. Promotes the differentiation of a strip of labile nonlignified cells sandwiched between layers of lignified cells. {ECO:0000269|PubMed:11747817}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.23688s0002.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1759560.0AK175956.1 Arabidopsis thaliana mRNA for putative bHLH transcription factor (bHLH073/ALCATRAZ), complete cds, clone: RAFL22-64-A13.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020880969.11e-135transcription factor ALC
SwissprotQ9FHA21e-126ALC_ARATH; Transcription factor ALC
TrEMBLD7MKT41e-134D7MKT4_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.8__2705__AT5G67110.11e-135(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM139821724
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67110.13e-90bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Pabón-Mora N,Wong GK,Ambrose BA
    Evolution of fruit development genes in flowering plants.
    Front Plant Sci, 2014. 5: p. 300
    [PMID:25018763]
  3. Pfannebecker KC,Lange M,Rupp O,Becker A
    Seed Plant-Specific Gene Lineages Involved in Carpel Development.
    Mol. Biol. Evol., 2017. 34(4): p. 925-942
    [PMID:28087776]
  4. Zumajo-Cardona C,Ambrose BA,Pabón-Mora N
    Evolution of the SPATULA/ALCATRAZ gene lineage and expression analyses in the basal eudicot, Bocconia frutescens L. (Papaveraceae).
    Evodevo, 2017. 8: p. 5
    [PMID:28331573]
  5. He H, et al.
    CELLULASE6 and MANNANASE7 Affect Cell Differentiation and Silique Dehiscence.
    Plant Physiol., 2018. 176(3): p. 2186-2201
    [PMID:29348141]