PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.23701s0002.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family HSF
Protein Properties Length: 326aa    MW: 37261.7 Da    PI: 5.7461
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.23701s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.11.6e-34181102103
                           HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXX CS
          HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgk 90 
                           F+ k+y++++d+ ++ li+w    nsf+v+d+ +f++++Lp yFkh+nf+SFvRQLn+YgF+kv+ ++         weF++++F +g+
  Araha.23701s0002.1.p  18 FIVKTYQMVNDPLTDWLITWGPAHNSFIVVDPLDFSQRILPAYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEHFLRGQ 97 
                           9********************999*****************************************999.........************ PP

                           XXXXXXXXXXXXX CS
          HSF_DNA-bind  91 kellekikrkkse 103
                           k+ll++i r+k++
  Araha.23701s0002.1.p  98 KHLLKNIARRKHA 110
                           **********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.9E-5314107IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.5E-3215107IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.109.7E-3715107IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000569.3E-181841IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.2E-2918107IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.3E-185668IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405781IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.3E-186981IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006970Biological Processresponse to osmotic stress
GO:0009737Biological Processresponse to abscisic acid
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MEDDNGNNTN NNNVIAPFIV KTYQMVNDPL TDWLITWGPA HNSFIVVDPL DFSQRILPAY  60
FKHNNFSSFV RQLNTYGFRK VDPDRWEFAN EHFLRGQKHL LKNIARRKHA RGMYGQDLED  120
GEIVREIERL KEEQRELEAE IQRMNQRIEA TEKRPEQMMA FLYKVVEDPD LLPRMMLEKE  180
RTKQQVSDKK KRRVTMSTVK AEEEEVEEDE ARVFRVISSS TPSPSSTENL YRNHSPDGWV  240
VPMTQGQFGN YETGLVANSM LSNSTSSTSS SLTSTFSLPE SVNGGGCGNI QGERRYKETA  300
TFGGVVESNP PTTPPYPFSL FRGGF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-251510726129Heat shock factor protein 1
5d5v_B2e-251510726129Heat shock factor protein 1
5d5v_D2e-251510726129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1188192KKKRR
2188193KKKRRV
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00379DAPTransfer from AT3G24520Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.23701s0002.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ3223820.0HQ322382.1 Arabidopsis thaliana heat shock factor (HSF) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020889030.10.0heat stress transcription factor C-1
SwissprotQ9LV520.0HSFC1_ARATH; Heat stress transcription factor C-1
TrEMBLD7L5480.0D7L548_ARALL; Uncharacterized protein (Fragment)
STRINGfgenesh2_kg.3__2665__AT3G24520.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67752743
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.10.0heat shock transcription factor C1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guan Q,Yue X,Zeng H,Zhu J
    The protein phosphatase RCF2 and its interacting partner NAC019 are critical for heat stress-responsive gene regulation and thermotolerance in Arabidopsis.
    Plant Cell, 2014. 26(1): p. 438-53
    [PMID:24415771]