PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.24127s0007.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family GRAS
Protein Properties Length: 535aa    MW: 58891.6 Da    PI: 5.7762
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.24127s0007.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS413.71.7e-1261555251374
                  GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89 
                           l+e+L+e+A+av++gd++ a  +L  l++++s +g+p+qRl +y++e+L+arl +s+s++ykal+++e +     e ++++++++e++P
  Araha.24127s0007.1.p 155 LKEVLVEAARAVADGDFATAYGFLDVLEQMVSVSGSPIQRLGTYMAEGLRARLEGSGSNIYKALKCNEPT---GRELMSYMSVLYEICP 240
                           5789*****************************************************************9...9999999********* PP

                  GRAS  90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpf 176
                           + kf++ taN aIlea++ge+rvHiiDf+i qG Q++ L+q+La+Rp+gpp lR+Tgv++++s+  +   l+ +gerLak+A+++gvpf
  Araha.24127s0007.1.p 241 YWKFAYTTANAAILEAIAGETRVHIIDFQIAQGSQYMFLIQELAKRPGGPPFLRVTGVDDSQSTyaRGGGLSLVGERLAKLAQSCGVPF 329
                           ************************************************************999999999******************** PP

                  GRAS 177 efnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyys 265
                           ef+  +  +  +++ e+L v+pg a++Vn+ + lh+++desvs+e++rd++L+l+kslsPk+v++veqe+++n+++Fl rf+e+l+yy+
  Araha.24127s0007.1.p 330 EFHD-AIMSGCKVQREHLGVEPGFAVVVNFPYVLHHMPDESVSVENHRDRLLHLIKSLSPKLVTLVEQESNTNTSPFLSRFVETLDYYT 417
                           ****.7888999***************************************************************************** PP

                  GRAS 266 alfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee 354
                           a+f+s+++  pr++++ri+ E+++++r+ivn++ace++er+erhe l+kWr r+++aGF+  p+s++aa  a+ +l+ ++++ y++  +
  Araha.24127s0007.1.p 418 AMFESIDVARPRDDKQRISAEQHCVARDIVNMIACEESERVERHELLGKWRVRMMMAGFTGWPVSTSAAFAASEMLKGYDKN-YKLGGN 505
                           ********************************************************************************66.****** PP

                  GRAS 355 sgslvlgWkdrpLvsvSaWr 374
                           +g+l+l Wk+rp+ ++S W+
  Araha.24127s0007.1.p 506 EGALYLFWKRRPMATCSTWK 525
                           *******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098563.855129506IPR005202Transcription factor GRAS
PfamPF035145.9E-124155525IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
Sequence ? help Back to Top
Protein Sequence    Length: 535 aa     Download sequence    Send to blast
MQTSQKHHSA AGLHMLYPQV YCSPQFQAKD NNGFSDIPSK ENFFTLESST ASGSLPSYDS  60
PSVSITSGRS PFSPQGSQSC ISDLHPSPDN VYGSPLSGVS SVAYDEAGVK SKIRELEVSL  120
LSGDTKVEEF SGFSPAVGKS WNWDELLALT PQLDLKEVLV EAARAVADGD FATAYGFLDV  180
LEQMVSVSGS PIQRLGTYMA EGLRARLEGS GSNIYKALKC NEPTGRELMS YMSVLYEICP  240
YWKFAYTTAN AAILEAIAGE TRVHIIDFQI AQGSQYMFLI QELAKRPGGP PFLRVTGVDD  300
SQSTYARGGG LSLVGERLAK LAQSCGVPFE FHDAIMSGCK VQREHLGVEP GFAVVVNFPY  360
VLHHMPDESV SVENHRDRLL HLIKSLSPKL VTLVEQESNT NTSPFLSRFV ETLDYYTAMF  420
ESIDVARPRD DKQRISAEQH CVARDIVNMI ACEESERVER HELLGKWRVR MMMAGFTGWP  480
VSTSAAFAAS EMLKGYDKNY KLGGNEGALY LFWKRRPMAT CSTWKPNPNP NQIG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-571595258375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as a positive regulator of continuous red light signals downstream of phytochrome B (phyB). Required for the regulation of hypocotyl elongation during de-etiolation. May be required to modulate phytochrome A (phyA) signal transduction in a phyB-independent way. {ECO:0000269|PubMed:16680434}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.24127s0007.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By osmotic and cold stresses, and UV-A/B. {ECO:0000269|PubMed:16680434}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2265490.0AK226549.1 Arabidopsis thaliana mRNA for scarecrow-like 13, clone: RAFL07-11-B03.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020873210.10.0scarecrow-like protein 13
SwissprotQ9M0M50.0SCL13_ARATH; Scarecrow-like protein 13
TrEMBLA0A178UVK60.0A0A178UVK6_ARATH; SCL13
STRINGBostr.30275s0178.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62128141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17230.10.0SCARECROW-like 13