PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araha.24272s0001.1.p

Organism

Arabidopsis halleri

Taxonomic ID

81970

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

Trihelix

Protein Properties

Length: 235aa MW: 26633.6 Da PI: 10.2366

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araha.24272s0001.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	34.6	4.8e-11	5	72	21	86
trihelix 21 lrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqle 86 l+rg+lk+++W+ev++ + r+ + ++ +qCk++++ ++k+++ +k+ + + +++ss++ +f++le Araha.24272s0001.1.p 5 LKRGNLKQQHWKEVAEIVnRDNKSPKTDIQCKNRIDTVKKKFELEKAKMVAGgDDNNSSKWIFFKKLE 72 7899************788899***************999998888689999******97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	6.7E-13	2	72	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 235 aa Download sequence Send to blast
RYLELKRGNL KQQHWKEVAE IVNRDNKSPK TDIQCKNRID TVKKKFELEK AKMVAGGDDN 60 NSSKWIFFKK LELLIGERAI TTTTTANKAL KVTPLSSRSN LYQRQAKSSG NVKRSGDSTR 120 WHFRKIVASE TESESEPELS ADSGKSLPLP PLLLPPPVTL DKTGGGVGRE VGEVAMAIVG 180 FAESYEKVET LKLKQMVELE KEKMKFSKEL ELQRIHFFKA QLEMLRNRLE DRDS*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription repressor that binds specific DNA sequence such as the GT-box-like motif 5'-CGTGATT-3' in the AT2S3 promoter. Negative regulator of seed maturation genes during seed germination and seedling development. May target GT-box-containing embryonic genes by competing with the binding of transcriptional activators to this promoter region (PubMed:19155348). Contributes to the maintenance and control of seed filling (PubMed:22231199) and may repress the maturation program during early embryogenesis (PubMed:21330492). {ECO:0000269\|PubMed:19155348, ECO:0000269\|PubMed:21330492, ECO:0000269\|PubMed:22231199}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araha.24272s0001.1.p

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023641742.1	2e-95	trihelix transcription factor ASIL1
Swissprot	Q9SYG2	2e-60	ASIL1_ARATH; Trihelix transcription factor ASIL1
TrEMBL	R0I7T6	1e-94	R0I7T6_9BRAS; Uncharacterized protein (Fragment)
STRING	Cagra.3631s0002.1.p	5e-97	(Capsella grandiflora)
STRING	Bostr.28625s0284.1.p	2e-97	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8910	16	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G54060.1	3e-54	6B-interacting protein 1-like 1

Link Out ? help Back to Top
Phytozome	Araha.24272s0001.1.p