PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.24306s0002.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family HD-ZIP
Protein Properties Length: 192aa    MW: 22898.9 Da    PI: 7.5544
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.24306s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox54.32.3e-171165356
                          --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
              Homeobox  3 kRttftkeqleeLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                          k+++++ +q+++Le  F+  ++++ +e++ ++A+++gL  +qV vWFqNrRa++k
  Araha.24306s0002.1.p 11 KKRRLSVDQIKTLEMNFKAeENKLEQERKVRIADETGLHPNQVAVWFQNRRARWK 65
                          456899************88**********************************9 PP
2HD-ZIP_I/II117.48.1e-3810103193
           HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeee.kLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 
                           ekkrrls +q+k+LE++F++ee kLe+erKv++a e gl+p qvavWFqnrRAR+ktkqlE+dy +Lk++yd+lk e ++Le+e++ L+
  Araha.24306s0002.1.p  10 EKKRRLSVDQIKTLEMNFKAEEnKLEQERKVRIADETGLHPNQVAVWFQNRRARWKTKQLERDYCVLKAHYDSLKLEYNNLEHETQVLT 98 
                           69*****************9887****************************************************************** PP

           HD-ZIP_I/II  89 eelke 93 
                           ++lke
  Araha.24306s0002.1.p  99 SKLKE 103
                           *9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003892.0E-14971IPR001356Homeobox domain
PROSITE profilePS5007115.0781067IPR001356Homeobox domain
SuperFamilySSF466897.1E-151174IPR009057Homeodomain-like
PfamPF000461.1E-141165IPR001356Homeobox domain
CDDcd000862.91E-111168No hitNo description
Gene3DG3DSA:1.10.10.602.0E-171866IPR009057Homeodomain-like
PROSITE patternPS0002704265IPR017970Homeobox, conserved site
PfamPF021834.5E-1467108IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MEQDTFSLGE KKRRLSVDQI KTLEMNFKAE ENKLEQERKV RIADETGLHP NQVAVWFQNR  60
RARWKTKQLE RDYCVLKAHY DSLKLEYNNL EHETQVLTSK LKELRTKVRE EKREEEHTMS  120
LKEQKRETEE ENDKIFQMVP TSHNGLCSST TLGSMAEPCQ FRNYPEKEII MVKLKELRNL  180
NYVDYGSNLQ W*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15967RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. May be involved in the regulation of gibberellin signaling. {ECO:0000269|PubMed:10732669, ECO:0000269|PubMed:18049796}.
UniProtProbable transcription activator that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. May be involved in the regulation of gibberellin signaling. {ECO:0000269|PubMed:10732669, ECO:0000269|PubMed:18049796}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.24306s0002.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By gibberellin. Down-regulated in leaves by drought stress. {ECO:0000269|PubMed:17999151, ECO:0000269|PubMed:18049796}.
UniProtINDUCTION: By gibberellin. Down-regulated in leaves by drought stress. {ECO:0000269|PubMed:17999151, ECO:0000269|PubMed:18049796}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002893860.11e-124homeobox-leucine zipper protein HOX4
SwissprotQ6K4981e-35HOX4_ORYSJ; Homeobox-leucine zipper protein HOX4
SwissprotQ9XH371e-35HOX4_ORYSI; Homeobox-leucine zipper protein HOX4
TrEMBLD7KL471e-123D7KL47_ARALL; Predicted protein
STRINGAl_scaffold_0001_36261e-124(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2529133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22430.15e-34homeobox protein 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]