PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.24446s0003.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bHLH
Protein Properties Length: 233aa    MW: 26503.2 Da    PI: 7.0218
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.24446s0003.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.94.1e-0975109137
                           CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS- CS
                   HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskK 37 
                           +r++h+e Er+RR++i s f +Lr +lP+++  ++kK
  Araha.24446s0003.1.p  75 KRAKHKELERQRRQEITSLFKNLRYILPSQY--TKKK 109
                           79***************************63..3333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000835.41E-672109No hitNo description
SuperFamilySSF474592.04E-772113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS508889.55374130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.0E-775126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-675109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MDFPDSSLFI PDFAYENDLD FSTLITPSTH ISFQEPYPCN PVIRCAGTEN DGRQKACETT  60
MTSEIRKGDD EPRNKRAKHK ELERQRRQEI TSLFKNLRYI LPSQYTKKKI KEVSEKRDRI  120
KRSITHPSST GECSIRSVTS STCSCVGDTH IAVVVRPCLI GLEIVVSCCI RHEYCLSNVL  180
QLLAQEQCFN VVSCNSTRLY QRIVHTIVSE VEEGIEVYFS ELQENIIKMG TP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17486KRAKHKELERQRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.24446s0003.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4885891e-149AF488589.1 Arabidopsis thaliana clone bHLH055 putative bHLH transcription factor mRNA, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020869346.11e-149LOW QUALITY PROTEIN: transcription factor bHLH55
SwissprotQ9LN951e-134BH055_ARATH; Transcription factor bHLH55
TrEMBLA0A178W3V01e-135A0A178W3V0_ARATH; Uncharacterized protein
STRINGAT1G12540.11e-132(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62281843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12540.11e-136bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Wisman E, et al.
    Knock-out mutants from an En-1 mutagenized Arabidopsis thaliana population generate phenylpropanoid biosynthesis phenotypes.
    Proc. Natl. Acad. Sci. U.S.A., 1998. 95(21): p. 12432-7
    [PMID:9770503]