PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.24544s0001.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family M-type_MADS
Protein Properties Length: 193aa    MW: 22327.6 Da    PI: 10.2128
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.24544s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF80.31.3e-251059251
                          ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                          + +++s +++++s+R+++i+KKA+EL++LCd+e++vi+++++g+l+++++
  Araha.24544s0001.1.p 10 SCSSYSLASTSLSNRLETIFKKASELCTLCDIEACVIYYGPDGELKTWPK 59
                          6789********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.4E-4160IPR002100Transcription factor, MADS-box
PfamPF003191.9E-141857IPR002100Transcription factor, MADS-box
PROSITE profilePS500669.6011961IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.23E-161993IPR002100Transcription factor, MADS-box
CDDcd002661.39E-171985No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MTMRSLPSSS CSSYSLASTS LSNRLETIFK KASELCTLCD IEACVIYYGP DGELKTWPKE  60
REKVRDIALR YSQLNEALRR KKRVNLYDFL NKKKNKGLKN PNKKRKMSLK KVNELKYPIS  120
DHYSPDQISK LIQSLELNVS KVRERLRFVE SQKQNETKPD HQGLASTSLN QQTQSLNPSQ  180
FSLFMYNHGD NTL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
191105KKKNKGLKNPNKKRK
292104KKNKGLKNPNKKR
397105LKNPNKKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.24544s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0106990.0AB010699.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MSN9.
GenBankAY1412230.0AY141223.1 Arabidopsis thaliana MADS-box protein AGL43 mRNA, complete cds.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020872955.11e-118agamous-like MADS-box protein AGL75
SwissprotQ9FIX02e-97AGL81_ARATH; Agamous-like MADS-box protein AGL81
TrEMBLD7MJH91e-117D7MJH9_ARALL; Uncharacterized protein
TrEMBLD7MJI61e-117D7MJI6_ARALL; Predicted protein
STRINGAl_scaffold_0007_37411e-117(Arabidopsis lyrata)
STRINGscaffold_704060.11e-118(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56620126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39750.12e-93AGAMOUS-like 81
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]