PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.24636s0001.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family WOX
Protein Properties Length: 297aa    MW: 31929.1 Da    PI: 6.9935
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.24636s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox482.2e-153191257
                          T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
              Homeobox  2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                          r+R+++++eq  +Le+ F++   +p +ee  ++ k l     + +++V++WFqNrR + ++
  Araha.24636s0001.1.p 31 RSRWSPKPEQMLILESIFHSgMVNPPKEETVRIRKMLekygAVGDANVFYWFQNRRSRSRR 91
                          89*****************99*************************************997 PP
2Wus_type_Homeobox1062.4e-343093265
     Wus_type_Homeobox  2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                          +r+RW+P+peQ+ iLe++++sG+++P+kee+ ri+++Le+yG+++d+NVfyWFQNr++R+r++q
  Araha.24636s0001.1.p 30 VRSRWSPKPEQMLILESIFHSGMVNPPKEETVRIRKMLEKYGAVGDANVFYWFQNRRSRSRRRQ 93
                          589***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.8E-142398IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.6E-82798IPR009057Homeodomain-like
PROSITE profilePS5007111.6122792IPR001356Homeobox domain
SMARTSM003891.2E-62996IPR001356Homeobox domain
PfamPF000463.4E-133191IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009734Biological Processauxin-activated signaling pathway
GO:0048830Biological Processadventitious root development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MDQEQTPQSP TGHSRSPSSS ASGSTSAEPV RSRWSPKPEQ MLILESIFHS GMVNPPKEET  60
VRIRKMLEKY GAVGDANVFY WFQNRRSRSR RRQRQLQAAA AAAAATTNTC DQTMMVSNSL  120
PHHSGSDLGF GGCSTSSNYL FGGSSQVPSY FVGLSSSPPC SSSSSTSSSA SSSSSYGGGC  180
DNQSNSGMEN LLTMSGQMSY HEVNHHHYQN HSSNVASILC PSDQNSNFHY QQGAITVFIN  240
GVPTEVTRGG IDIKATFGED LVLVHSSGVP LPTDEFGFLM HSLQHGEAYF LVPRQT*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00330DAPTransfer from AT3G03660Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.24636s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU3511890.0EU351189.1 Arabidopsis lyrata At3g03660-like protein gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020888937.10.0WUSCHEL-related homeobox 11 isoform X1
SwissprotQ6X7J31e-168WOX11_ARATH; WUSCHEL-related homeobox 11
TrEMBLA0A178V7831e-177A0A178V783_ARATH; WOX11
STRINGAT3G03660.21e-177(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28192768
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03660.21e-161WUSCHEL related homeobox 11
Publications ? help Back to Top
  1. Hu X,Xu L
    Transcription Factors WOX11/12 Directly Activate WOX5/7 to Promote Root Primordia Initiation and Organogenesis.
    Plant Physiol., 2016. 172(4): p. 2363-2373
    [PMID:27784768]
  2. Sheng L, et al.
    Non-canonical WOX11-mediated root branching contributes to plasticity in Arabidopsis root system architecture.
    Development, 2017. 144(17): p. 3126-3133
    [PMID:28743799]
  3. Liu J, et al.
    The WOX11-LBD16 Pathway Promotes Pluripotency Acquisition in Callus Cells During De Novo Shoot Regeneration in Tissue Culture.
    Plant Cell Physiol., 2018. 59(4): p. 734-743
    [PMID:29361138]
  4. Baesso B, et al.
    Transcription factors PRE3 and WOX11 are involved in the formation of new lateral roots from secondary growth taproot in A. thaliana.
    Plant Biol (Stuttg), 2018. 20(3): p. 426-432
    [PMID:29450949]