PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araha.2482s0003.1.p

Organism

Arabidopsis halleri

Taxonomic ID

81970

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

ZF-HD

Protein Properties

Length: 100aa MW: 11085.5 Da PI: 8.5267

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araha.2482s0003.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	103.5	1.4e-32	47	100	2	54
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHR 54 ++v+YkeClkNhAa++Ggha+DGCgEfmps++++ ++++++kCaACgCHRnFHR Araha.2482s0003.1.p 47 NTVTYKECLKNHAAAIGGHALDGCGEFMPSPSSTpSDPTSFKCAACGCHRNFHR 100 689****************************99****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	1.2E-27	49	100	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	1.0E-15	49	100	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	1.2E-29	50	100	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	27.19	51	100	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain

Sequence ? help Back to Top
Protein Sequence Length: 100 aa Download sequence Send to blast
MLEVRSMDMT PKSPEPESET PTRIQPAKPI SFSNGIIKRR HHHHHHNTVT YKECLKNHAA 60 AIGGHALDGC GEFMPSPSST PSDPTSFKCA ACGCHRNFHR

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araha.2482s0003.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK117188	1e-139	AK117188.1 Arabidopsis thaliana mRNA, clone: RAFL16-72-M15.
GenBank	AP002049	1e-139	AP002049.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MYI13.
GenBank	AY093171	1e-139	AY093171.1 Arabidopsis thaliana unknown protein (At3g28920) mRNA, complete cds.
GenBank	AY128820	1e-139	AY128820.1 Arabidopsis thaliana unknown protein (At3g28920) mRNA, complete cds.
GenBank	CP002686	1e-139	CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010425683.1	2e-54	PREDICTED: zinc-finger homeodomain protein 9-like
Swissprot	Q9LHF0	4e-49	ZHD9_ARATH; Zinc-finger homeodomain protein 9
TrEMBL	A0A1J3GXX5	8e-55	A0A1J3GXX5_NOCCA; Zinc-finger homeodomain protein 9 (Fragment)
STRING	XP_010425683.1	9e-54	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2220	25	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G28920.1	3e-38	homeobox protein 34

Link Out ? help Back to Top
Phytozome	Araha.2482s0003.1.p

Publications ? help Back to Top
Li B, et al. Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis. Plant Cell, 2018. 30(1): p. 178-195 [PMID:29317470]