PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araha.24841s0001.1.p

Organism

Arabidopsis halleri

Taxonomic ID

81970

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

GeBP

Protein Properties

Length: 192aa MW: 21749.1 Da PI: 9.3321

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araha.24841s0001.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	85.6	6.5e-27	1	73	19	97
DUF573 19 lidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 +idfka+tg+sp+dd+++f++++k+sisf+vsk+q+ +Kir LK+K+ +k+kk +s++++hd+k++el+k+iWg Araha.24841s0001.1.p 1 MIDFKAETGTSPYDDMNKFFDIAKESISFDVSKNQFGDKIRGLKNKYFGKRKK------KSVESDHDKKCLELAKSIWG 73 9**************************************************......8999*************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	1.0E-18	1	73	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 192 aa Download sequence Send to blast
MIDFKAETGT SPYDDMNKFF DIAKESISFD VSKNQFGDKI RGLKNKYFGK RKKKSVESDH 60 DKKCLELAKS IWGLGVVESP VKSKKKKDES VAKANGKDKN LESLVEEDKE VGILRGDSES 120 SNWFDKSFLV RVVASLGVDE CIVKWKWSKV TMDTKKRIEE KMKLVEGKEF ELLSQKIDVL 180 KEVISVIAET I*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araha.24841s0001.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY042861	8e-89	AY042861.1 Arabidopsis thaliana Unknown protein (T12C22.8) mRNA, complete cds.
GenBank	AY072504	8e-89	AY072504.1 Arabidopsis thaliana unknown protein (At1g44810; T12C22.8) mRNA, complete cds.
GenBank	CP002684	8e-89	CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBank	T12C22	8e-89	AC020576.2 Sequence of BAC T12C22 from Arabidopsis thaliana chromosome 1, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020886805.1	1e-126	probable transcription factor At1g44810
Swissprot	Q9LPF0	4e-80	STKLB_ARATH; Probable transcription factor At1g44810
TrEMBL	D7L6G9	1e-100	D7L6G9_ARALL; Uncharacterized protein
STRING	scaffold_303870.1	1e-101	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM313	28	181

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G44810.1	5e-82	DNA-binding storekeeper protein-related transcriptional regulator

Link Out ? help Back to Top
Phytozome	Araha.24841s0001.1.p

Publications ? help Back to Top
Khare D, et al. Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana. New Phytol., 2017. 213(3): p. 1257-1273 [PMID:27768815]