PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.2490s0006.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bHLH
Protein Properties Length: 591aa    MW: 65941.9 Da    PI: 6.7083
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.2490s0006.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.97.5e-13433478454
                          HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                          +h e+Er+RR+++N++f  Lr+++P+ +      K++Ka+ L  Av YI++L
  Araha.2490s0006.1.p 433 NHVEAERQRREKLNQRFYALRSVVPNiS------KMDKASLLGDAVSYINEL 478
                          799***********************66......***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142153.1E-5348236IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.136429478IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.01E-18432499IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.84E-14432483No hitNo description
Gene3DG3DSA:4.10.280.106.1E-18433492IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-10433478IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.8E-16435484IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 591 aa     Download sequence    Send to blast
MNIGRVVWNE DDKAIVASLL GKRALDYLLS NSVSNANLLM TTGSDENLQN KLSDLVERPN  60
ASNFSWNYAI FWQISRSKAG DLVLCWGDGY CREPKEGEKS EIVRILSMGR EEETHQTMRK  120
RVLQKLHDLF GGLEEENCAL GLDRVTDTEM FLLSSMYFSF PRGEGGPGKC FASGKPVWLS  180
DVVNSGSDYC VRSFLAKSAG IQTVVLVPTD LGVVELGSTS CLPESEESIL SIRSLFSSSL  240
PPVRAVTAVS LPEKIDDSRT VNASKIFGKD LHNSGFIHHH QFHQQQPQQQ QQHRQFREKL  300
TVRKMDDRAP KRVDAYPNNG NRFMFSNPGT NNNSLLNPTW VQPENYTRPI NVKEVPSTDE  360
FKFLPLQQSS QRLLPPAQMQ IDFSAASSRA SENNSDGEGG GEWADAVGAD DTGNNRPRKR  420
GRRPANGRVE ALNHVEAERQ RREKLNQRFY ALRSVVPNIS KMDKASLLGD AVSYINELHA  480
KLKVMEAERE RLGYSSNPPI SLESDINVQT SGEDVTVRIN CPLESHPASR IFHAFEESKV  540
EVINSNLEVS QDTVLHTFVV KSEELTKEKL ISALSREQSN SVQSRTSSGR *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A8e-26427489264Transcription factor MYC2
5gnj_B8e-26427489264Transcription factor MYC2
5gnj_E8e-26427489264Transcription factor MYC2
5gnj_F8e-26427489264Transcription factor MYC2
5gnj_G8e-26427489264Transcription factor MYC2
5gnj_I8e-26427489264Transcription factor MYC2
5gnj_M8e-26427489264Transcription factor MYC2
5gnj_N8e-26427489264Transcription factor MYC2
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00100PBMTransfer from AT1G01260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.2490s0006.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By UV treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0236280.0AC023628.3 Arabidopsis thaliana chromosome I BAC F6F3 genomic sequence, complete sequence.
GenBankAF2516980.0AF251698.1 Arabidopsis thaliana putative transcription factor BHLH13 mRNA, complete cds.
GenBankAY0790120.0AY079012.1 Arabidopsis thaliana At1g01260/F6F3_25 mRNA, complete cds.
GenBankAY1207520.0AY120752.1 Arabidopsis thaliana transcription factor MYC7E, putative (At1g01260) mRNA, complete cds.
GenBankBT0045170.0BT004517.1 Arabidopsis thaliana At1g01260/F6F3_25 gene, complete cds.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020870176.10.0transcription factor bHLH13
RefseqXP_020870177.10.0transcription factor bHLH13
SwissprotQ9LNJ50.0BH013_ARATH; Transcription factor bHLH13
TrEMBLD7KQ940.0D7KQ94_ARALL; Basic helix-loop-helix family protein
STRINGfgenesh2_kg.1__101__AT1G01260.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37582759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.30.0bHLH family protein
Publications ? help Back to Top
  1. Sasaki-Sekimoto Y,Saito H,Masuda S,Shirasu K,Ohta H
    Comprehensive analysis of protein interactions between JAZ proteins and bHLH transcription factors that negatively regulate jasmonate signaling.
    Plant Signal Behav, 2014. 9(1): p. e27639
    [PMID:24394987]
  2. Fonseca S, et al.
    bHLH003, bHLH013 and bHLH017 are new targets of JAZ repressors negatively regulating JA responses.
    PLoS ONE, 2014. 9(1): p. e86182
    [PMID:24465948]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]