PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.24929s0003.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB
Protein Properties Length: 258aa    MW: 29850.2 Da    PI: 9.9704
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.24929s0003.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.83.8e-162671147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                          rg W + Ed+ l + v+q+G+++W+ Ia+++  gR++k+c++rw++ 
  Araha.24929s0003.1.p 26 RGHWRPVEDDNLRQFVEQYGPKNWNFIAQHLY-GRSGKSCRLRWYNQ 71
                          899****************************9.************96 PP
2Myb_DNA-binding54.92e-1778121146
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                           ++++T+eE+e+l++a++  G++ W++Iar ++ gRt++ +k++++ 
  Araha.24929s0003.1.p  78 KKPFTEEEEERLLKAHRIQGNR-WASIARLFP-GRTDNAVKNHFHV 121
                           689*******************.*********.**********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.7732176IPR017930Myb domain
SuperFamilySSF466898.99E-2924119IPR009057Homeodomain-like
SMARTSM007171.3E-132574IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.2E-252779IPR009057Homeodomain-like
PfamPF139214.3E-162989No hitNo description
CDDcd001671.37E-122970No hitNo description
SMARTSM007171.5E-1477125IPR001005SANT/Myb domain
PROSITE profilePS5129418.44877127IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.5E-2080125IPR009057Homeodomain-like
CDDcd001679.26E-1180120No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MEIEIASMEM SRGSNSFDNK KPSCQRGHWR PVEDDNLRQF VEQYGPKNWN FIAQHLYGRS  60
GKSCRLRWYN QLDPNITKKP FTEEEEERLL KAHRIQGNRW ASIARLFPGR TDNAVKNHFH  120
VIMARRKREN FSSTATSTFN QTWHNVLSPS SSITRLNRSQ FGLWRYRKDK SHGLWPYSFV  180
SAPINDQFGS SSVSNVRHEI YLERRKSKEL VDDHNYTFHA ATPDHKKTSN EDGPSIGDDG  240
EKNNVTFIDF LGVGLAS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-34221263107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.24929s0003.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1425170.0AY142517.1 Arabidopsis thaliana putative transcription factor (At4g33450) mRNA, complete cds.
GenBankAY5196110.0AY519611.1 Arabidopsis thaliana MYB transcription factor (At4g33450) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002867181.10.0transcription factor MYB3R-3
TrEMBLD7M8R20.0D7M8R2_ARALL; AtMYB69
STRINGfgenesh1_pg.C_scaffold_70006540.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM101332036
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33450.10.0myb domain protein 69