PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araha.2504s0003.1.p

Organism

Arabidopsis halleri

Taxonomic ID

81970

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

bHLH

Protein Properties

Length: 216aa MW: 24486.9 Da PI: 4.8201

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araha.2504s0003.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.5	0.00056	152	180	2	30
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC CS HLH 2 rrahnerErrRRdriNsafeeLrellPka 30 r++ +Er R++++ ++f +L ++ + Araha.2504s0003.1.p 152 RKKSDDAERSRVQQLEECFKNLEMVVLDL 180 7778899***************9999885 PP

Sequence ? help Back to Top
Protein Sequence Length: 216 aa Download sequence Send to blast
KDRLIVEVYI SRVEVISEKK KTVDINGFQV LASQVTSARK IFTEHPDIAE DFKPKNQVVK 60 KEYMNVLLNL VETLNKPSQN HSETDLSNAD SNLSELMEQG FKLEWLKSKL DEVSLMRKKA 120 DADVQQLDER VKNLELMNLD LKTKLEEVSL ERKKSDDAER SRVQQLEECF KNLEMVVLDL 180 KVKLGKEEAK SSAEAKSSAE AKSSADGFLL VDEVD*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araha.2504s0003.1.p

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC005956	5e-44	AC005956.4 Arabidopsis thaliana chromosome 2 clone MHK10 map EG05C12, complete sequence.
GenBank	CP002685	5e-44	CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019099798.1	1e-102	PREDICTED: MATH domain and coiled-coil domain-containing protein At2g42480-like
Swissprot	P0DKG4	8e-52	MCC07_ARATH; MATH domain and coiled-coil domain-containing protein At2g42465
TrEMBL	D7LIT0	1e-125	D7LIT0_ARALL; Uncharacterized protein
STRING	scaffold_403119.1	1e-125	(Arabidopsis lyrata)

Link Out ? help Back to Top
Phytozome	Araha.2504s0003.1.p

Publications ? help Back to Top
Cosson P, et al. RTM3, which controls long-distance movement of potyviruses, is a member of a new plant gene family encoding a meprin and TRAF homology domain-containing protein. Plant Physiol., 2010. 154(1): p. 222-32 [PMID:20584941]