PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.25051s0004.2.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB
Protein Properties Length: 586aa    MW: 66907.9 Da    PI: 10.0374
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.25051s0004.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.47.8e-14274318146
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                           r+ WT eEd++l  av ++G  +W ++a+ ++ gRt+ qc +rw k
  Araha.25051s0004.2.p 274 RKEWTSEEDDQLRAAVDLFGESDWQSVANILQ-GRTGPQCSNRWKK 318
                           789*****************************.***********98 PP
2Myb_DNA-binding51.52.3e-16327369144
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 
                           + +W+ eEd++l+ av+++G+++W++Ia+ ++ gRt+ qc +rw
  Araha.25051s0004.2.p 327 KRNWSSEEDKRLKVAVTLFGTKNWRKIAQFVP-GRTGTQCLERW 369
                           569*****************************.*********** PP
3Myb_DNA-binding42.61.4e-13380422246
                           SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
       Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                           g+WT+eEd +l +a k++G   W+++a+ m   Rt+ qc  rw +
  Araha.25051s0004.2.p 380 GKWTKEEDAKLREAMKEHGYC-WSKVASDMS-CRTDSQCARRWKS 422
                           79*****************99.*********.***********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.972122211IPR017877Myb-like domain
SMARTSM0071714126217IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-4129145IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-4191227IPR009057Homeodomain-like
SuperFamilySSF466897.42E-12199265IPR009057Homeodomain-like
PROSITE profilePS500907.735216268IPR017877Myb-like domain
SMARTSM007175.4E-6220270IPR001005SANT/Myb domain
CDDcd001670.00223223268No hitNo description
Gene3DG3DSA:1.10.10.602.8E-12228275IPR009057Homeodomain-like
SuperFamilySSF466891.33E-19253322IPR009057Homeodomain-like
PROSITE profilePS5129421.86269324IPR017930Myb domain
SMARTSM007171.3E-12273322IPR001005SANT/Myb domain
PfamPF002493.8E-12274318IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.9E-16276322IPR009057Homeodomain-like
CDDcd001671.35E-9276320No hitNo description
SuperFamilySSF466893.88E-26324420IPR009057Homeodomain-like
PROSITE profilePS5129415.953325373IPR017930Myb domain
SMARTSM007171.5E-14326375IPR001005SANT/Myb domain
PfamPF002493.3E-14327370IPR001005SANT/Myb domain
CDDcd001672.37E-11329373No hitNo description
Gene3DG3DSA:1.10.10.608.3E-19329376IPR009057Homeodomain-like
PROSITE profilePS5129423.242374428IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.3E-17377423IPR009057Homeodomain-like
SMARTSM007172.3E-11378426IPR001005SANT/Myb domain
PfamPF002492.8E-12380423IPR001005SANT/Myb domain
CDDcd001671.95E-9381423No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 586 aa     Download sequence    Send to blast
MPATSSGFPE AALAFVDAIR KNRLYQSFLR RKLSEIEATI EQNEKHRKNV KIVKDFQASC  60
KRITKQALSQ GKDPRVELIS TPKSRPASDS FGGNDKKTSY LTMGPPENAC VANYRMALEK  120
YPVSVDRANW TTKEKENLAK GLKQQVQDTL IREAFERSSD LEGSADDINT ILEGIKSLEI  180
TPEMIRQFLP KANWDQLDIK NRSAAECEAR WMSSDDSLIN NGPWTVAEDN YIRLITKTKG  240
FTDWLDIAVS LGTNRTPFQC LARYQRSLNP DILRKEWTSE EDDQLRAAVD LFGESDWQSV  300
ANILQGRTGP QCSNRWKKSL HPSRTRKRNW SSEEDKRLKV AVTLFGTKNW RKIAQFVPGR  360
TGTQCLERWG NSLDPKLKFG KWTKEEDAKL REAMKEHGYC WSKVASDMSC RTDSQCARRW  420
KSLYPHLAHL RQEARRLQKE ATIGNFVDRE SERPDRVVGD FLALAEISLE PEEPVLTKKR  480
KPRQTKKADT ECKSEAVCAD TERQPKKQRK GLERCSGDVC RKENEKTEDN VKEKKQRRKR  540
TSVAGTSNNS SVTTNCPHVK IGIQKLKPRR KVSALVPIEN LDAQN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C6e-301834229159MYB PROTO-ONCOGENE PROTEIN
1h89_C6e-301834229159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.25051s0004.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002867927.10.0snRNA-activating protein complex subunit 4
TrEMBLD7MG960.0D7MG96_ARALL; Uncharacterized protein
STRINGfgenesh1_pg.C_scaffold_70019620.0(Arabidopsis lyrata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18100.20.0myb domain protein 4r1