PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.25051s0005.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family HSF
Protein Properties Length: 124aa    MW: 14451.8 Da    PI: 10.9396
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.25051s0005.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind55.61.5e-175972101
                           HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXX CS
          HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgk 90 
                           F k++ye+++d++l+++isws++++sfv+ +++e+ ++++   F    f+ F   L+ +gFk++k+ +++        eF + +F +g+
  Araha.25051s0005.1.p   5 FYKRVYEVVDDPSLDSIISWSKSNKSFVIRNHQELRRRMIFANFHGPFFSNFFSMLKEFGFKRIKNGSGQ-------LEFGNANFVRGQ 86 
                           899*****************************************************************99.......************ PP

                           XXXXXXXXXXX CS
          HSF_DNA-bind  91 kellekikrkk 101
                            ell+k++ k+
  Araha.25051s0005.1.p  87 PELLKKMQLKA 97 
                           ******99775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.1E-16196IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.84E-19394IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.108.9E-20491IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.0E-16594IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.8E-5528IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.8E-55668IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 124 aa     Download sequence    Send to blast
GLFRFYKRVY EVVDDPSLDS IISWSKSNKS FVIRNHQELR RRMIFANFHG PFFSNFFSML  60
KEFGFKRIKN GSGQLEFGNA NFVRGQPELL KKMQLKAYHK RSMKIIAKEK AEEAADGLKL  120
LRV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.25051s0005.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002867928.15e-81heat stress transcription factor A-4a
TrEMBLD7MG971e-79D7MG97_ARALL; Uncharacterized protein
STRINGscaffold_702441.12e-80(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50671450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G19630.13e-27HSF family protein