PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.2549s0012.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family LBD
Protein Properties Length: 241aa    MW: 26667.5 Da    PI: 8.7378
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.2549s0012.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26095.55.7e-302103197
               DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 
                          +C++C+vlr++C++ C+l+p++     +++q +++ +v+k+FG++ ++++++ +pe +r+++++sl++eA+ r+ +Pv+Gavg+++++++
  Araha.2549s0012.1.p   2 SCNGCRVLRKGCSETCILRPCLqwiesAESQGHATVFVAKFFGRAGLMSFISGVPELQRPALFQSLLFEACGRTVNPVNGAVGMLWTGNW 91 
                          6*********************9999777889********************************************************** PP

               DUF260  86 qleqlkaelall 97 
                          +++q+++e++l+
  Araha.2549s0012.1.p  92 HVCQAAVETVLR 103
                          ******998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089119.5711107IPR004883Lateral organ boundaries, LOB
PfamPF031952.2E-252101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSETCILR PCLQWIESAE SQGHATVFVA KFFGRAGLMS FISGVPELQR  60
PALFQSLLFE ACGRTVNPVN GAVGMLWTGN WHVCQAAVET VLRGGTLRPF SDLLESPPLM  120
LSSDESSAIW HQEVSRNKNN HCHFSTSRSK TEMKDSLVNR KRFKSDSDLD LQMNRDLTLT  180
AQAVPVPFLP PSSFCKVVKG DRPGSPSEES VTTSCWENGM RGDNKQRRNK GEKKLLNLFV  240
*
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.2549s0012.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4738740.0AB473874.1 Arabidopsis thaliana ASL41 mRNA for ASYMMETRIC LEAVES2-like 41 protein, complete cds.
GenBankAY0721440.0AY072144.1 Arabidopsis thaliana unknown protein (At4g37540) mRNA, complete cds.
GenBankAY1229760.0AY122976.1 Arabidopsis thaliana unknown protein (At4g37540) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020875549.11e-168LOB domain-containing protein 39 isoform X1
SwissprotQ9SZE81e-164LBD39_ARATH; LOB domain-containing protein 39
TrEMBLD7MAL21e-167D7MAL2_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.7__297__AT4G37540.11e-168(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM82128122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37540.11e-167LOB domain-containing protein 39