PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.2597s0023.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family AP2
Protein Properties Length: 584aa    MW: 65299.4 Da    PI: 6.8231
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.2597s0023.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP243.57.9e-14271330155
                  AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +++Aa+a++ a++k+++
  Araha.2597s0023.1.p 271 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqaRKgRQVYLGGYDKEDKAARAYDLAALKYWN 330
                          57*******************666664478446**********99*************97 PP
2AP249.69.7e-16373424155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          s y+GV++++++grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  Araha.2597s0023.1.p 373 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 424
                          57****************988532...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.79E-16271339IPR016177DNA-binding domain
PfamPF008478.7E-11271330IPR001471AP2/ERF domain
CDDcd000182.07E-20271340No hitNo description
PROSITE profilePS5103218.545272338IPR001471AP2/ERF domain
SMARTSM003803.1E-25272344IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.6E-14272338IPR001471AP2/ERF domain
PRINTSPR003675.3E-6273284IPR001471AP2/ERF domain
PfamPF008474.1E-10373424IPR001471AP2/ERF domain
CDDcd000183.31E-11373432No hitNo description
SuperFamilySSF541711.11E-17373433IPR016177DNA-binding domain
PROSITE profilePS5103219.111374432IPR001471AP2/ERF domain
SMARTSM003807.9E-31374438IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.5E-18374432IPR001471AP2/ERF domain
PRINTSPR003675.3E-6414434IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010080Biological Processregulation of floral meristem growth
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0035265Biological Processorgan growth
GO:0048364Biological Processroot development
GO:0060772Biological Processleaf phyllotactic patterning
GO:0060774Biological Processauxin mediated signaling pathway involved in phyllotactic patterning
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 584 aa     Download sequence    Send to blast
MAPMTNWLTF SLSPMEMLRS SDQSQFVSYD ASSAASSSPY LLDNFYGWTN QKPQEFFKEE  60
AQLAAASMAD STILTTFVDP QSHSQNHIPK LEDFLGDSSS IVRYSDNSQT DTQDSSLTQI  120
YDPRHHHHHN HNQTGFYSDH HDFKTMAGFQ TAFSTNSGSE VDDSASIGRT HLTGEYLGHV  180
VESSGPELGF HGGSTGALSL GVNVNNTNHR NDNDSNQITN HHYRGNNNNG DRINNNENEK  240
TDSEKEKAVV AVETSDCSNK KIADTFGQRT SIYRGVTRHR WTGRYEAHLW DNSCRREGQA  300
RKGRQVYLGG YDKEDKAARA YDLAALKYWN ATATTNFPIT NYSKEVEEMK HMTKQEFIAS  360
LRRKSSGFSR GASIYRGVTR HHQQGRWQAR IGRVAGNKDL YLGTFATEEE AAEAYDIAAI  420
KFRGINAVTN FEMNRYDVEA IMKSALPIGG AAKRLKLSLE AASSEQKPIL GHQLHHFQQQ  480
QQQQQQLQLQ SSPNHSSINF ALCPNSAAQS QQIIPCGIPF EAAALYHHQQ QQQQQQQQNF  540
FQHFPANAAS DSTGSNNNSN VQGTMGLMAP NPAEFFLWPN QSY*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00504DAPTransfer from AT5G10510Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.2597s0023.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5856830.0AY585683.1 Arabidopsis thaliana clone at5g10510 AP2/EREBP transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020876725.10.0AP2-like ethylene-responsive transcription factor AIL6 isoform X1
RefseqXP_020876726.10.0AP2-like ethylene-responsive transcription factor AIL6 isoform X1
SwissprotQ52QU20.0AIL6_ARATH; AP2-like ethylene-responsive transcription factor AIL6
TrEMBLD7M2X90.0D7M2X9_ARALL; Uncharacterized protein
STRINGscaffold_601064.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33332765
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10510.20.0AINTEGUMENTA-like 6
Publications ? help Back to Top
  1. Krizek BA
    Intronic sequences are required for AINTEGUMENTA-LIKE6 expression in Arabidopsis flowers.
    BMC Res Notes, 2015. 8: p. 556
    [PMID:26459062]
  2. Yamaguchi N,Jeong CW,Nole-Wilson S,Krizek BA,Wagner D
    AINTEGUMENTA and AINTEGUMENTA-LIKE6/PLETHORA3 Induce LEAFY Expression in Response to Auxin to Promote the Onset of Flower Formation in Arabidopsis.
    Plant Physiol., 2016. 170(1): p. 283-93
    [PMID:26537561]
  3. Krizek BA, et al.
    RNA-Seq Links the Transcription Factors AINTEGUMENTA and AINTEGUMENTA-LIKE6 to Cell Wall Remodeling and Plant Defense Pathways.
    Plant Physiol., 2016. 171(3): p. 2069-84
    [PMID:27208279]
  4. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]