PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.26186s0007.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family M-type_MADS
Protein Properties Length: 247aa    MW: 27626.4 Da    PI: 5.4617
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.26186s0007.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF37.23.8e-121159350
                          --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-.TTSEEEEEE CS
                SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifs.stgklyeys 50
                          i ++  r+ ++ +R++ ++KK +ELS+LCd+ +++++f  ++++l  ++
  Araha.26186s0007.1.p 11 IRDYKTRKSSLKRRLTSLMKKVNELSILCDMPASLVVFNrEENQLAAWP 59
                          789999*******************************973567888887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006614.227149IPR002100Transcription factor, MADS-box
SMARTSM004323.9E-9160IPR002100Transcription factor, MADS-box
CDDcd002661.89E-19285No hitNo description
SuperFamilySSF554554.58E-18394IPR002100Transcription factor, MADS-box
PfamPF003194.8E-111155IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MARKKAPLAW IRDYKTRKSS LKRRLTSLMK KVNELSILCD MPASLVVFNR EENQLAAWPS  60
PEAAKSLIDK FYSLTDHERT MKAIDPESYV QTNIEKIEKK LADTRKVITE LEMEHLMFDL  120
QNGRELANLS PTEVDKLISY SGKKLMCLSK QMGSTVDHEA LRASNVASGS GGNGFNMMGT  180
GRSFYYVDKW VFVDPQVQKP CDDETHLPTM VTGLDLNMEP SDDVDKDLGT YKGESSKAAG  240
AEDDSE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.26186s0007.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0025430.0AP002543.1 Arabidopsis thaliana genomic DNA, chromosome 5, BAC clone:F15M7.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
GenBankDQ0566720.0DQ056672.1 Arabidopsis thaliana MADS-box family protein (At5g06500) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020879043.11e-173agamous-like MADS-box protein AGL80
TrEMBLA0A178ULF51e-140A0A178ULF5_ARATH; AGL96
TrEMBLQ9FG201e-140Q9FG20_ARATH; AGAMOUS-like 96
STRINGAT5G06500.11e-141(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87741332
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06500.11e-129AGAMOUS-like 96