PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.26208s0001.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family B3
Protein Properties Length: 276aa    MW: 31956.6 Da    PI: 8.2133
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.26208s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B334.14.8e-11171031394
                           TT-EE--HHH.HTT.........---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                    B3  13 sgrlvlpkkfaeeh.........ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                             r+++p++ a+++         +g k+ ++++t+++ +sg+ W++++  + ++++++l++GWk+ vk+ ++ e   + F++dg  ++ 
  Araha.26208s0001.1.p  17 FFRVYIPNQTADDMnlplvldkiSG-KPLPRKVTVKSvSSGNIWRMEM--KANGDTVFLRDGWKKIVKDENVTEPILLEFEFDG--SGV 100
                           5689999999999999999999744.45999******9999*******..************************9999999876..443 PP

                           .EE CS
                    B3  92 lvv 94 
                           +++
  Araha.26208s0001.1.p 101 YHF 103
                           454 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.1E-1414108IPR015300DNA-binding pseudobarrel domain
CDDcd100171.17E-614106No hitNo description
Gene3DG3DSA:2.40.330.103.0E-1115106IPR015300DNA-binding pseudobarrel domain
SMARTSM010197.6E-917109IPR003340B3 DNA binding domain
PROSITE profilePS5086310.2517109IPR003340B3 DNA binding domain
PfamPF023629.9E-918102IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.3E-5175274IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.22E-8177261IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MEENSSQNEL LDTVQKFFRV YIPNQTADDM NLPLVLDKIS GKPLPRKVTV KSVSSGNIWR  60
MEMKANGDTV FLRDGWKKIV KDENVTEPIL LEFEFDGSGV YHFCVYEYGS MCKRMRSQME  120
KEVIQVDSTE EESEEDVLVD DEESTKGLEE SPRRGGTSRR RANLKIDSHK FYEHQDNKRN  180
PSFPVDMTQS RTRIPSLLIK DYNLTFPNMV IVRDKIGILK RRITVWKNRS VYLNGISSII  240
RRNHVKPGDE MVFELKMVNG YHGLVHEIKV HIIKA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.26208s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL0968591e-119AL096859.2 Arabidopsis thaliana DNA chromosome 3, BAC clone T6H20.
GenBankCP0026861e-119CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002875801.10.0B3 domain-containing protein REM22
SwissprotQ9STF11e-177REM22_ARATH; B3 domain-containing protein REM22
TrEMBLD7LN480.0D7LN48_ARALL; Transcriptional factor B3 family protein
STRINGfgenesh1_pm.C_scaffold_50008490.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16649810
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46770.11e-166B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]