PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.2632s0002.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bHLH
Protein Properties Length: 383aa    MW: 43533.4 Da    PI: 7.6245
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.2632s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH314.6e-10211255655
                          HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           ++ r+RR+++N++f+ Lr+llP+      +K  Ka++L  A e ++sLq
  Araha.2632s0002.1.p 211 EAVNRKRREKLNESFQALRSLLPPG-----TKAYKASVLSIAREQLSSLQ 255
                          6788*******************97.....8*************999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.462205254IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-11209273IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.6E-7211255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-8211260IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-11212272IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.33E-8215259No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MDAFFVTDDP NTRKQLIGSL AQSFGCVYVC LWSYYFPRPS NYLISMDGYY NEVSEEPSSS  60
SSSSGSLARS LFHEYRQSVI PLQNGHVPSM AFMNNLPYVE IRPQEIQRLA FNDAQRLFYQ  120
QARIQTVIFM GCRSGEIELG MTYDATNMKI EASLREWFPE DFNRKSSPVN SDYLRPPHHP  180
SSSSSSLSPN NVSEYSSLLF PLIPKPSTTT EAVNRKRREK LNESFQALRS LLPPGTKAYK  240
ASVLSIAREQ LSSLQGEISK LLERNRKLEA KLAGERDIIN DLLPNERFNV HISHISESTS  300
RERILDLRVV LRGDSIRVDD LMIRLLEFLK QINNVSLVSI EARTRARDTS VVLVSLRLKI  360
EGEWDESAFQ EAVRRVVADL AH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1214219RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.2632s0002.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0240351e-119AB024035.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MHM17.
GenBankCP0026881e-119CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001330357.11e-130basic helix-loop-helix (bHLH) DNA-binding family protein
SwissprotQ9LTS43e-91BH041_ARATH; Putative transcription factor bHLH041
TrEMBLA0A1P8BAL11e-129A0A1P8BAL1_ARATH; Basic helix-loop-helix (BHLH) DNA-binding family protein
STRINGXP_010483181.11e-122(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM70602840
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.13e-93bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]