PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araha.2632s0002.2.p

Organism

Arabidopsis halleri

Taxonomic ID

81970

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

bHLH

Protein Properties

Length: 173aa MW: 19732.7 Da PI: 10.4006

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araha.2632s0002.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.4	9.2e-12	3	45	8	55
HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 Er+RR+++N++f+ Lr+llP+ +K +Ka++L A e ++sLq Araha.2632s0002.2.p 3 SERKRREKLNESFQALRSLLPPG-----TKKDKASVLSIAREQLSSLQ 45 6******************97.....8************99998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.253	1	44	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.5E-13	1	50	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	6.41E-14	2	62	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.26E-8	2	49	No hit	No description
Gene3D	G3DSA:4.10.280.10	6.4E-13	2	63	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.7E-9	3	45	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010200	Biological Process	response to chitin
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 173 aa Download sequence Send to blast
MISERKRREK LNESFQALRS LLPPGTKKDK ASVLSIAREQ LSSLQGEISK LLERNRKLEA 60 KLAGERDIIN DLLPNERFNV HISHISESTS RERILDLRVV LRGDSIRVDD LMIRLLEFLK 120 QINNVSLVSI EARTRARDTS VVLVSLRLKI EGEWDESAFQ EAVRRVVADL AH*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	3	8	ERKRRE
2	4	9	RKRREK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araha.2632s0002.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB024035	1e-123	AB024035.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MHM17.
GenBank	CP002688	1e-123	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020879239.1	1e-112	putative transcription factor bHLH041
Swissprot	Q9LTS4	1e-100	BH041_ARATH; Putative transcription factor bHLH041
TrEMBL	D7MM88	1e-112	D7MM88_ARALL; Predicted protein
STRING	Al_scaffold_0008_2143	1e-112	(Arabidopsis lyrata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56960.1	1e-102	bHLH family protein

Link Out ? help Back to Top
Phytozome	Araha.2632s0002.2.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]