PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araha.2633s0001.1.p

Organism

Arabidopsis halleri

Taxonomic ID

81970

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

bHLH

Protein Properties

Length: 226aa MW: 25635.5 Da PI: 4.2203

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araha.2633s0001.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	12.6	0.00026	150	166	39	55
TCHHHHHHHHHHHHHHH CS HLH 39 sKaeiLekAveYIksLq 55 + a++L +AveYIk Lq Araha.2633s0001.1.p 150 DTASVLNEAVEYIKFLQ 166 679*************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.57E-5	139	174	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.3E-6	148	173	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 226 aa Download sequence Send to blast
MTEEFEIARI STGAWWSSPT NTTTIYSLPR STEISLDVTN FGWQNFDNKI NDPNDGFINM 60 HNSFFEGLFD PNEQLLPDSW PKSTVPNAKS ELLESFTFLD NMFLIDTEAE SFLDHEIRNH 120 NSKEQITQDC KNVTSKAPQK ICLLISLQTD TASVLNEAVE YIKFLQEQVT VLSNPDQNTI 180 GSVQQQQCSN KKSINTQEEE EECSPRKHVD LASRGLCLMP ISASYP

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araha.2633s0001.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT015446	1e-121	BT015446.1 Arabidopsis thaliana At4g05170 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002874835.2	1e-131	LOW QUALITY PROTEIN: transcription factor bHLH114
Swissprot	Q9M0X8	1e-116	BH114_ARATH; Transcription factor bHLH114
TrEMBL	D7M1Y9	1e-130	D7M1Y9_ARALL; Predicted protein
STRING	Al_scaffold_0006_3588	1e-130	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14428	17	19

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G05170.1	4e-83	bHLH family protein

Link Out ? help Back to Top
Phytozome	Araha.2633s0001.1.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]