PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.2637s0003.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ERF
Protein Properties Length: 119aa    MW: 13383.8 Da    PI: 5.9745
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.2637s0003.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP230.59e-107094325
                  AP2  3 ykGVrwdkkrgrWvAeIrdpse...n 25
                         y+GVr+++ +g+W+AeIrdp++   n
  Araha.2637s0003.1.p 70 YRGVRQRP-WGKWAAEIRDPNKaarN 94
                         9*******.**********9665533 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003800.001269109IPR001471AP2/ERF domain
PfamPF008471.0E-46990IPR001471AP2/ERF domain
SuperFamilySSF541713.33E-66990IPR016177DNA-binding domain
PROSITE profilePS5103211.21969118IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-116993IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 119 aa     Download sequence    Send to blast
MHSGKRPLSP ESMAGKREEK KELCCCSTLS ESDVSAFVSE LTEQPTPPSM DDQSSSLTLQ  60
EQSNSRQRNY RGVRQRPWGK WAAEIRDPNK AARNGDEEDL EKKERCLGEC PDRSRQPT*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00289DAPTransfer from AT2G33710Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.2637s0003.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1364561e-126AY136456.1 Arabidopsis thaliana putative AP2 domain transcription factor (At2g33710) mRNA, complete cds.
GenBankBT0002361e-126BT000236.1 Arabidopsis thaliana putative AP2 domain transcription factor (At2g33710) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020882861.11e-59ethylene-responsive transcription factor ERF112
SwissprotP930074e-57EF112_ARATH; Ethylene-responsive transcription factor ERF112
TrEMBLD7LGD14e-58D7LGD1_ARALL; AP2 domain-containing transcription factor family protein (Fragment)
STRINGfgenesh2_kg.4__1380__AT2G33710.16e-59(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33710.12e-59ERF family protein