PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.26853s0001.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bHLH
Protein Properties Length: 89aa    MW: 10255 Da    PI: 5.8215
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.26853s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.43.9e-114441055
                          HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                          ++RR+riN+++  L+ l+P+      +K++ +++Le+Av+Y+k Lq
  Araha.26853s0001.1.p  4 QKRRERINERLRILQHLVPNG-----TKVDISTMLEEAVQYVKFLQ 44
                          89*****************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.132143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-12454IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.2E-7449IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.95E-10448No hitNo description
SuperFamilySSF474591.11E-13460IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-8444IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 89 aa     Download sequence    Send to blast
MMVQKRRERI NERLRILQHL VPNGTKVDIS TMLEEAVQYV KFLQLQIKLL SSDDLWMYAP  60
IAYNGMDIGL DLKLNALIPD DSRDTFGF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.26853s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ5775841e-111AJ577584.1 Arabidopsis thaliana mRNA for putative bHLH084 transcription factor (bHLH084 gene).
GenBankDQ4464971e-111DQ446497.1 Arabidopsis thaliana clone pENTR221-At2g14760 basic helix-loop-helix protein/bHLH protein (At2g14760) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001189527.14e-49basic helix-loop-helix (bHLH) DNA-binding superfamily protein
SwissprotQ7XHI92e-47BH084_ARATH; Transcription factor bHLH84
TrEMBLF4IGG99e-48F4IGG9_ARATH; Basic helix-loop-helix (BHLH) DNA-binding superfamily protein
STRINGAT2G14760.31e-48(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28342663
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.35e-41bHLH family protein