PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araha.27810s0008.1.p

Organism

Arabidopsis halleri

Taxonomic ID

81970

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

LBD

Protein Properties

Length: 181aa MW: 19535.5 Da PI: 5.5941

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araha.27810s0008.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	45.2	2.7e-14	30	74	57	101
DUF260 57 amsslvyeAearardPvyGavgvilklqqqleqlkaelallkeel 101 + +l+yeA ar+rdPvyG+vg+i++lq+q+++l+aela+++++l Araha.27810s0008.1.p 30 XVVTLTYEALARLRDPVYGCVGHIFALQHQVMNLQAELAYVQTQL 74 6889*************************************9885 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03195	1.7E-11	30	71	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 181 aa Download sequence Send to blast
MCLRSLLRFG GRDVSFHGGA QGFRXXXXXX VVTLTYEALA RLRDPVYGCV GHIFALQHQV 60 MNLQAELAYV QTQLSTLQGL PPPNPQNNSR TEAASSSNAP LISSVDNKSN VSSSSLHIPC 120 MSSQQQQPKE AIEVSTESVD LSTLFGLEDP VDEDGDLNAL AREFLSKYLT GGKCRPSSPI 180 *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araha.27810s0008.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB473855	1e-176	AB473855.1 Arabidopsis thaliana ASL22 mRNA for ASYMMETRIC LEAVES2-like 22 protein, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020879137.1	9e-99	LOB domain-containing protein 31
Swissprot	O81322	3e-86	LBD31_ARATH; LOB domain-containing protein 31
TrEMBL	D7M5R7	1e-91	D7M5R7_ARALL; LOB domain protein 31
STRING	fgenesh1_pm.C_scaffold_6002970	2e-92	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM108	28	359

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00210.1	8e-75	LOB domain-containing protein 31

Link Out ? help Back to Top
Phytozome	Araha.27810s0008.1.p