PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.27825s0001.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bZIP
Protein Properties Length: 194aa    MW: 22350.6 Da    PI: 10.0206
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.27825s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_125.43.2e-0878136563
                           CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                           +r +r  +NR +A+rsR +K++ +e  + +  +Le eN +L ++l     ++++ k+e+
  Araha.27825s0001.1.p  78 RRKKRILSNRKSAQRSRIKKQKHLEDVRIELNKLEIENGELENRLRYVVYHCQREKMEN 136
                           689999************************************99999888888888776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003387.7E-874138IPR004827Basic-leucine zipper domain
PfamPF077163.3E-676122IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1705.4E-776123No hitNo description
PROSITE profilePS502179.55376122IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.69E-878126No hitNo description
CDDcd147025.78E-1379123No hitNo description
PROSITE patternPS0003608196IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MSTFSPVFAN HVPALETGFT PWDASDLFSI FNPPVLPMEV IPGLEKTNPS QIQNQSYSNP  60
GLKDKPLDRT GSNVVDERRK KRILSNRKSA QRSRIKKQKH LEDVRIELNK LEIENGELEN  120
RLRYVVYHCQ REKMENDSLR LEHRVLHEKL LNLRQALVMR QIQQSSTCAS WSCINSTVVT  180
VQHNPSMIRN HVI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17798RRKKRILSNRKSAQRSRIKKQK
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.27825s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002862568.11e-121basic leucine zipper 4
TrEMBLD7MXA71e-119D7MXA7_ARALL; Uncharacterized protein
STRINGscaffold_33400002.11e-120(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33382665
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49760.13e-52basic leucine-zipper 5