PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.2816s0004.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bZIP
Protein Properties Length: 185aa    MW: 21405.4 Da    PI: 5.5815
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.2816s0004.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_145.41.7e-1473129561
                          CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 
                          +++rr+ +NRe+ArrsR RK+  ++eL   v+ L +eN++L ++l++ +++ + + +
  Araha.2816s0004.1.p  73 RKQRRMVSNRESARRSRMRKQRHLDELLSQVAWLRSENQQLLDKLNQVSDNNDHVIQ 129
                          689********************************************9998876655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003385.2E-1469133IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.01371134IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.7E-1172126No hitNo description
PfamPF001702.1E-1273128IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.0E-1373124No hitNo description
CDDcd147022.60E-1874121No hitNo description
PROSITE patternPS0003607691IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MQPNYDSSSL NNMQQQDYFH LNYYNNLNPS TNNNNLNLLQ YPQIQELNLQ SPVSNNSTTS  60
DDATEGIFVI NERKQRRMVS NRESARRSRM RKQRHLDELL SQVAWLRSEN QQLLDKLNQV  120
SDNNDHVIQE NLSLKEENLE LRQVITSVKK LGGGIHDKYS SSSMDELDQD FSSITDDPRT  180
HHPS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18592RRSRMRKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269|PubMed:26973252}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00512DAPTransfer from AT5G15830Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.2816s0004.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1178280.0AK117828.1 Arabidopsis thaliana At5g15830 mRNA for putative bZIP transcription factor AtbZip3, complete cds, clone: RAFL18-02-O03.
GenBankAL3911440.0AL391144.1 Arabidopsis thaliana DNA chromosome 5, BAC clone F14F8 (ESSA project).
GenBankBT0036830.0BT003683.1 Arabidopsis thaliana At5g15830 mRNA, complete cds.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020876606.11e-129basic leucine zipper 43
SwissprotQ9FMC26e-31BZP43_ARATH; Basic leucine zipper 43
TrEMBLD7M7G71e-128D7M7G7_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.6__1562__AT5G15830.11e-128(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM106321532
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15830.14e-98basic leucine-zipper 3
Publications ? help Back to Top
  1. Nowak K,Gaj MD
    Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis.
    J. Plant Physiol., 2016. 193: p. 119-26
    [PMID:26973252]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]