PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.2820s0001.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family B3
Protein Properties Length: 280aa    MW: 31572.8 Da    PI: 10.2756
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.2820s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B334.43.9e-112564399
                         S-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                   B3 43 grsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                         g +W ++l+ + k+g++ l+kGWkeF+kan++k g++++ kl++ ++++++++++r+
  Araha.2820s0001.1.p  2 GTKWLINLQ-QDKRGTMSLGKGWKEFAKANDIKLGESFTMKLVW-EDTTPMLSLLRT 56
                         899*****5.44445689**************************.888899999886 PP
2B366.73.4e-21142233499
                          E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                   B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                           ++++++  ++rl+l+ +fa+e++++k++  tl l d++g +W  +++ r ++g++ l++GWkeF++ n+Lk gD+++ +l++ ++++++
  Araha.2820s0001.1.p 142 FTITPSSVGKNRLILSAQFARENNINKPG--TLYLSDTDGTKWLTTVK-RDNKGTMSLGNGWKEFAETNDLKPGDSFTMELIW-EDTTPL 227
                          555555555667***********999766..8***************5.55556789**************************.888899 PP

                          EEEE-S CS
                   B3  94 vkvfrk 99 
                          ++++r+
  Araha.2820s0001.1.p 228 LSLLRT 233
                          988875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100171.08E-9155No hitNo description
SMARTSM010190.066157IPR003340B3 DNA binding domain
SuperFamilySSF1019367.46E-10156IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.169157IPR003340B3 DNA binding domain
PfamPF023621.4E-9156IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.2E-9251IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.7E-676117IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.5E-28131232IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.22E-23135233IPR015300DNA-binding pseudobarrel domain
SMARTSM010193.6E-27139234IPR003340B3 DNA binding domain
PROSITE profilePS5086315.538139234IPR003340B3 DNA binding domain
PfamPF023623.3E-19139232IPR003340B3 DNA binding domain
CDDcd100173.96E-19143232No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
DGTKWLINLQ QDKRGTMSLG KGWKEFAKAN DIKLGESFTM KLVWEDTTPM LSLLRTEFSS  60
SKANKKESIS SAPKSKDSSP IIKNRFVTPA LTPEDFKACK LIRPSQFMKE NNKEKSRSVD  120
RERDHLRGRD LTPSSQKQFV TFTITPSSVG KNRLILSAQF ARENNINKPG TLYLSDTDGT  180
KWLTTVKRDN KGTMSLGNGW KEFAETNDLK PGDSFTMELI WEDTTPLLSL LRTKFSSSKS  240
NKEESISSEP KSRDSSQTVE NRFVTLALTP EDVKACKLVT
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.2820s0001.1.p
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0069541e-138AC006954.8 Arabidopsis thaliana chromosome 2 clone F25P17 map mi238, complete sequence.
GenBankCP0026851e-138CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020885753.11e-161B3 domain-containing protein REM13 isoform X1
RefseqXP_020885755.11e-161B3 domain-containing protein REM13 isoform X2
RefseqXP_020885756.11e-165B3 domain-containing protein REM13 isoform X3
SwissprotP0CAP51e-147REM13_ARATH; B3 domain-containing protein REM13
TrEMBLA0A1P8B2101e-146A0A1P8B210_ARATH; B3 domain-containing protein REM13
TrEMBLA0A1P8B2141e-146A0A1P8B214_ARATH; B3 domain-containing protein REM13
STRINGAT2G24650.11e-145(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM137801326
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24650.11e-135DNA binding;DNA binding;sequence-specific DNA binding transcription factors
Publications ? help Back to Top
  1. Bindschedler LV,Palmblad M,Cramer R
    Hydroponic isotope labelling of entire plants (HILEP) for quantitative plant proteomics; an oxidative stress case study.
    Phytochemistry, 2008. 69(10): p. 1962-72
    [PMID:18538804]
  2. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]