PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araha.28422s0001.1.p

Organism

Arabidopsis halleri

Taxonomic ID

81970

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

M-type_MADS

Protein Properties

Length: 247aa MW: 28087.1 Da PI: 6.7927

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araha.28422s0001.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	48.5	1.1e-15	2	32	19	49
HHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 19 gilKKAeELSvLCdaevaviifsstgklyey 49 g++KKA+EL++LCdaeva+i+fs+ +k+y + Araha.28422s0001.1.p 2 GLFKKASELCTLCDAEVAIIVFSPGQKVYSF 32 9****************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.9E-5	1	35	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	14.759	1	36	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	7.33E-17	1	56	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.4E-15	1	32	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence Send to blast
SGLFKKASEL CTLCDAEVAI IVFSPGQKVY SFGHPNVNVV MDRFLNFNPP RPHHHNNMQP 60 NEARQNAAVQ DLNNHLTLVS NQLEVEKKIT GDLKQKRKDN KMFGNWWEEP VEELNMTQLT 120 EFQCGLENLR KAVAYKVSKY HQADVHRRNF YAGSSSNFAF GISGDTNINS TELDLFNDQR 180 MASMNLSNYN HNMIVPNHSS PFGNNGNNTH GFAPEYKAED SQNQSQCVKQ ENVSEYAHYP 240 HFGRDY*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269\|PubMed:18334668}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araha.28422s0001.1.p

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020889053.1	1e-102	agamous-like MADS-box protein AGL62
Swissprot	Q9FKK2	2e-82	AGL62_ARATH; Agamous-like MADS-box protein AGL62
TrEMBL	D7LA22	1e-178	D7LA22_ARALL; Uncharacterized protein
STRING	scaffold_302326.1	1e-179	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM86	28	390

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60440.1	7e-76	AGAMOUS-like 62

Link Out ? help Back to Top
Phytozome	Araha.28422s0001.1.p

Publications ? help Back to Top
Xu W, et al. Endosperm and Nucellus Develop Antagonistically in Arabidopsis Seeds. Plant Cell, 2016. 28(6): p. 1343-60 [PMID:27233529] Figueiredo DD,Batista RA,Roszak PJ,Köhler C Auxin production couples endosperm development to fertilization. Nat Plants, 2015. 1: p. 15184 [PMID:27251719] Figueiredo DD,Batista RA,Roszak PJ,Hennig L,Köhler C Auxin production in the endosperm drives seed coat development in Arabidopsis. Elife, 2017. [PMID:27848912] Fiume E,Coen O,Xu W,Lepiniec L,Magnani E Growth of the Arabidopsis sub-epidermal integument cell layers might require an endosperm signal. Plant Signal Behav, 2017. 12(8): p. e1339000 [PMID:28613109] Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]