PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.2865s0001.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family M-type_MADS
Protein Properties Length: 219aa    MW: 25202.4 Da    PI: 10.3386
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.2865s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF56.82.9e-181050242
                         ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
               SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                         +ien++ r+ tf kR++g+lKKA+EL +LC++ ++vi+ s 
  Araha.2865s0001.1.p 10 FIENETARKSTFKKRKKGVLKKAHELGTLCGVPICVIVNSA 50
                         8*************************************885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006618.446149IPR002100Transcription factor, MADS-box
SMARTSM004327.0E-24160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.44E-23295IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-9323IPR002100Transcription factor, MADS-box
PfamPF003191.6E-171049IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-92338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MTRQKVKMAF IENETARKST FKKRKKGVLK KAHELGTLCG VPICVIVNSA YEQNPEVWPS  60
RETANKVVSQ WKTMSVMDKT KKMVNQETFL QQRITKATES WKKLRKENKE LEMKNVMFDC  120
LSGKTLVSRI EKSELRDFVY VIEQYLKDVI HRIEILKRNE ESSSALVPVA ATTTSSVMPV  180
VEMGSSSVGF YDKIRDQIQS TLNMKQTTKD LDLNKKQW*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12125KKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.2865s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB8306870.0AB830687.1 Arabidopsis halleri subsp. gemmifera AGL35 gene for agamous-like MADS-box protein AGL35, partial cds, isolate: e055.
GenBankAB8306880.0AB830688.1 Arabidopsis halleri subsp. halleri AGL35 gene for agamous-like MADS-box protein AGL35, partial cds, isolate: e056.
GenBankAB8306890.0AB830689.1 Arabidopsis halleri subsp. tatrica AGL35 gene for agamous-like MADS-box protein AGL35, partial cds, isolate: e057.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020879188.11e-157agamous-like MADS-box protein AGL80
TrEMBLS6AXX21e-158S6AXX2_ARAHG; Agamous-like MADS-box protein AGL35
STRINGAT5G26630.11e-131(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7028415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26630.11e-135M-type_MADS family protein