PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araha.28819s0002.1.p

Organism

Arabidopsis halleri

Taxonomic ID

81970

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

FAR1

Protein Properties

Length: 258aa MW: 30075 Da PI: 9.2135

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araha.28819s0002.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	91.7	9.6e-29	32	133	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk............tekerrtraetrtgCkaklkvkkekdgkwe 77 +fY+eYAk+vGF++ +++s++s+++g++++++fvC+++g+++e+ ++ ++++r +r++++t+Cka+l+vk+++dg+w+ Araha.28819s0002.1.p 32 EFYKEYAKSVGFTTIIEASRRSRMTGKFIDAKFVCTRYGSKKEDIDTglgtdgfnipqaRKRRRINRSSSKTDCKACLHVKRRQDGRWV 120 6*****************************************999******98888888******************** PP FAR1 78 vtkleleHnHela 90 v +l +eHnHe++ Araha.28819s0002.1.p 121 VRSLIKEHNHEIF 133 ********987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.3E-26	32	133	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 258 aa Download sequence Send to blast
MPSGECSKES VVMCSWMINE GREFESKEEA FEFYKEYAKS VGFTTIIEAS RRSRMTGKFI 60 DAKFVCTRYG SKKEDIDTGL GTDGFNIPQA RKRRRINRSS SKTDCKACLH VKRRQDGRWV 120 VRSLIKEHNH EIFTGQANSL RDLGGRKKLE KINVAIVKEV KSRKLLALED GDVERLIDFC 180 TVMQVENPFF FYSIDLNEEQ SLRNIFWGQS ITQQRLYGTE QLSFRPEDMY ERLQDMGQSS 240 FRHHTQQHQQ SNRNFSH*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	90	94	RKRRR
2	91	95	KRRRI

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araha.28819s0002.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL021637	0.0	AL021637.2 Arabidopsis thaliana DNA chromosome 4, BAC clone F18F4 (ESSA project).
GenBank	AL161552	0.0	AL161552.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 52.
GenBank	AY763412	0.0	AY763412.1 Arabidopsis thaliana FAR1-related 1 protein (FRS1) mRNA, complete cds.
GenBank	CP002687	0.0	CP002687.1 Arabidopsis thaliana chromosome 4 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020872706.1	1e-117	protein FAR1-RELATED SEQUENCE 1 isoform X2
Refseq	XP_020872707.1	1e-117	protein FAR1-RELATED SEQUENCE 1 isoform X3
Swissprot	Q5UBY2	1e-116	FRS1_ARATH; Protein FAR1-RELATED SEQUENCE 1
TrEMBL	R0GY70	1e-114	R0GY70_9BRAS; Uncharacterized protein
STRING	Cagra.2564s0022.1.p	1e-117	(Capsella grandiflora)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM118	26	253

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G19990.1	1e-109	FAR1-related sequence 1

Link Out ? help Back to Top
Phytozome	Araha.28819s0002.1.p