PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.29128s0005.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family LSD
Protein Properties Length: 145aa    MW: 16001.1 Da    PI: 5.3006
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.29128s0005.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD143.17.1e-145680125
               zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                          Cg+Cr lLsY rG+++V+C++C+tV
  Araha.29128s0005.1.p 56 CGSCRRLLSYLRGSKHVKCSSCQTV 80
                          ************************9 PP
2zf-LSD146.27.3e-1594118125
               zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                           C++C+ lL+YP+GApsVRC++C+ V
  Araha.29128s0005.1.p  94 CNNCKLLLMYPYGAPSVRCSSCNSV 118
                           ***********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010533.3E-185383IPR005735Zinc finger, LSD1-type
PfamPF069431.8E-105680IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010531.8E-1191119IPR005735Zinc finger, LSD1-type
PfamPF069433.9E-1294118IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009617Biological Processresponse to bacterium
Sequence ? help Back to Top
Protein Sequence    Length: 145 aa     Download sequence    Send to blast
MEEIQTQKKE EQKHRETEEE EEEEGPPPGW ESAVLPPPIA TVTAAVEIPE KAQMVCGSCR  60
RLLSYLRGSK HVKCSSCQTV NLVLEANQVG QVNCNNCKLL LMYPYGAPSV RCSSCNSVTD  120
ISENNKRPPW SEQQGPLKSL SSIR*
Functional Description ? help Back to Top
Source Description
UniProtPutative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.29128s0005.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0117601e-132BT011760.1 Arabidopsis thaliana At4g21610 mRNA, complete cds.
GenBankBT0123841e-132BT012384.1 Arabidopsis thaliana At4g21610 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002869877.18e-81protein LOL2
SwissprotO654266e-80LOL2_ARATH; Protein LOL2
TrEMBLD7MER72e-79D7MER7_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.7__2147__AT4G21610.13e-80(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM136112226
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21610.14e-81lsd one like 2