PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.29413s0001.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family AP2
Protein Properties Length: 312aa    MW: 35261.9 Da    PI: 8.7103
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.29413s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP241.24.2e-1351107155
                   AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                           s y+GV++++++gr++A+++d  s+n  ++k+ + g ++ +e Aa+a++ a++k++g
  Araha.29413s0001.1.p  51 SPYRGVTRHRWTGRYEAHLWDkNSWNDtQTKKGRQGAYDEEEAAARAYDLAALKYWG 107
                           68*******************88888888888888********************98 PP
2AP252.51.2e-16150201155
                   AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                           s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa a++ a+ +++g
  Araha.29413s0001.1.p 150 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAAIAYDIAAIEYRG 201
                           89****99**********99966...3.6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541715.04E-1551116IPR016177DNA-binding domain
PROSITE profilePS5103219.07252115IPR001471AP2/ERF domain
SMARTSM003805.0E-2152121IPR001471AP2/ERF domain
PRINTSPR003673.4E-65364IPR001471AP2/ERF domain
PfamPF008474.7E-953107IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-1253115IPR001471AP2/ERF domain
CDDcd000182.15E-14150211No hitNo description
PfamPF008471.1E-11150201IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-18150211IPR016177DNA-binding domain
PROSITE profilePS5103218.241151209IPR001471AP2/ERF domain
SMARTSM003801.1E-25151215IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-17151210IPR001471AP2/ERF domain
PRINTSPR003673.4E-6191211IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0045723Biological Processpositive regulation of fatty acid biosynthetic process
GO:1901959Biological Processpositive regulation of cutin biosynthetic process
GO:1904278Biological Processpositive regulation of wax biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0000981Molecular FunctionRNA polymerase II transcription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MAKVSRKSKK TIVDDEITDK TASASESVSI VFKSKRKRKS PPRNAPPQRS SPYRGVTRHR  60
WTGRYEAHLW DKNSWNDTQT KKGRQGAYDE EEAAARAYDL AALKYWGRDT LLNFPLPTYD  120
EDVKEMEGQS KEEYIGSLRR KSSGFSRGVS KYRGVARHHH NGRWEARIGR VFGNKYLYLG  180
TYATQEEAAI AYDIAAIEYR GLNAVTNFDV SRYLNPNAAT NHLPDKPDSD SKPIRNDPES  240
SDDNKSPKSE EIIEPSTSPE AITTRRSFPD DIQTYFGCQD SGKLATEEDV IFGGLNSFIN  300
PGFYNEFDYG P*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.29413s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1173000.0AK117300.1 Arabidopsis thaliana mRNA for unknown protein, complete cds, clone: RAFL16-86-I04.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020890548.10.0AP2-like ethylene-responsive transcription factor At1g79700 isoform X2
SwissprotA0JPZ81e-174AP2L3_ARATH; AP2-like ethylene-responsive transcription factor At1g79700
TrEMBLD7KWL40.0D7KWL4_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.2__2276__AT1G79700.20.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM55327140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79700.21e-153AP2 family protein