PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.29465s0005.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bHLH
Protein Properties Length: 179aa    MW: 20564 Da    PI: 10.384
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.29465s0005.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.31.8e-051649240
                          HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STC CS
                   HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsK 40
                          r+  n rE+ RR r+++ f+ L +++ +      +Kl  
  Araha.29465s0005.1.p 16 REQRNLREKDRRMRMKHLFSILSSHVSPT-----RKLPV 49
                          7889*********************9875.....45555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.45E-111181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088810.6771463IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-51677IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MGKAREIGDG NSSSLREQRN LREKDRRMRM KHLFSILSSH VSPTRKLPVP QLIDQATSFM  60
IQLKDKVNYL KEKKRTLLQG ELGNLYEGSF LLPKLSLRSR DSTIELNLIM DLNMKKVMLH  120
ELVSIFEEEG AQVMSANLQN LNDRATYTII AQAIISRIGI DPSRIEERVR KIIYGYIF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12025LREKDR
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.29465s0005.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3168611e-174AK316861.1 Arabidopsis thaliana AT1G10585 mRNA, partial cds, clone: RAFL05-21-F23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_563873.21e-121basic helix-loop-helix (bHLH) DNA-binding superfamily protein
SwissprotF4I4E11e-122BH167_ARATH; Transcription factor bHLH167
TrEMBLA0A178WJI71e-119A0A178WJI7_ARATH; Uncharacterized protein
STRINGAT1G10585.11e-120(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23822167
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10585.11e-113bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]