PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.29465s0006.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bHLH
Protein Properties Length: 175aa    MW: 20184.6 Da    PI: 10.6305
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.29465s0006.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH18.34.3e-061663254
                          HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                   HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                          r+  n rE+ RR r+++ f+ L + + +      ++l   +   +Av Y+ +L
  Araha.29465s0006.1.p 16 REQRNHREKVRRMRMKHLFSALSSYVSPT-----RRLPVPQLIDQAVSYMIQL 63
                          7889**********************997.....7899999999999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.7E-101381IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.0771463IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-61681IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0032069IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MEREREIGEG SASSLREQRN HREKVRRMRM KHLFSALSSY VSPTRRLPVP QLIDQAVSYM  60
IQLKEKVNCL NEKKMSLLRG EVKNRSEGSS LLPKLSIRSR DSVIEMNLVM DLNMKRIMLH  120
KLVSVFEEEG AQVMSANLQN LNDRTFYTII AQAIICRIGI DPSRIEKRLR DIIS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.29465s0006.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0070671e-143AC007067.4 Genomic sequence for Arabidopsis thaliana BAC T10O24 from Chromosome 1, complete sequence.
GenBankCP0026841e-143CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020870804.11e-115transcription factor bHLH168
SwissprotQ9XIJ11e-109BH168_ARATH; Transcription factor bHLH168
TrEMBLD7KLF81e-114D7KLF8_ARALL; T10O24.23
STRINGfgenesh2_kg.1__1131__AT1G10586.11e-114(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23822167
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10586.11e-99bHLH family protein