PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.29475s0001.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ERF
Protein Properties Length: 353aa    MW: 40098.2 Da    PI: 4.5581
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.29475s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.86.3e-1976126155
                   AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                           + ++GVr++  +g+WvAeIr+p   + r +r +lg+f taeeAa+a+++a++ ++g
  Araha.29475s0001.1.p  76 CSFRGVRQRI-WGKWVAEIREP---N-RgQRLWLGTFPTAEEAAAAYDEAARVMYG 126
                           579****998.**********8...3.35**********************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.25E-1976136No hitNo description
PfamPF008474.5E-1376126IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-3177136IPR001471AP2/ERF domain
PROSITE profilePS5103222.0177134IPR001471AP2/ERF domain
SMARTSM003806.2E-3977140IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-2178136IPR016177DNA-binding domain
PRINTSPR003671.3E-97889IPR001471AP2/ERF domain
PRINTSPR003671.3E-9100116IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0010286Biological Processheat acclimation
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MAVYEKTGTD TPKKRKSRAR ADGSTVADRL KKWKEYNEIV EASAIKDGEK PKRKVPAKGS  60
KKGCMKGKGG PDNSHCSFRG VRQRIWGKWV AEIREPNRGQ RLWLGTFPTA EEAAAAYDEA  120
ARVMYGPLAR LNFPQSVGSE FTSTSSQSEV CSVENKAVLR GDVCVKHEDT DCESKPFSQI  180
LDVREESCGT RPDSCPVGHQ DTNSVLNYDL LLEFEQQYWS EALQEKEKLK QEEEEIQQCW  240
SEAMQEEEKP KQEEEEIQQH QQQQQQQQPD LLTVADYGWP WLNDMENDQI PWDPNEFFDI  300
HELLGDMNEG MLPGPDQSQD QSHVNSGSYD LHPLHLEPHD GHEFDGLSSL DL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-1778139668ATERF1
3gcc_A2e-1778139668ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. {ECO:0000269|PubMed:11798174}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00346DAPTransfer from AT3G11020Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.29475s0001.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt and drought stresses. {ECO:0000269|PubMed:10809011, ECO:0000269|PubMed:9707537}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0077910.0AB007791.1 Arabidopsis thaliana mRNA for DREB2B, complete cds.
GenBankAB0165710.0AB016571.1 Arabidopsis thaliana DREB2B gene, complete cds.
GenBankAK1173630.0AK117363.1 Arabidopsis thaliana At3g11020 mRNA for putative DREB2B transcription factor, complete cds, clone: RAFL16-93-F04.
GenBankATAC0099910.0AC009991.5 Arabidopsis thaliana chromosome III BAC F9F8 genomic sequence, complete sequence.
GenBankBT0083510.0BT008351.1 Arabidopsis thaliana At3g11020 mRNA, complete cds.
GenBankCP0026860.0CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
GenBankKC4122530.0KC412253.1 Arabidopsis thaliana DRE/CRT-binding protein 2B (DREB2B) mRNA, DREB2B-AT3G11020 allele, complete cds, alternatively spliced.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020888280.10.0dehydration-responsive element-binding protein 2B
SwissprotO821330.0DRE2B_ARATH; Dehydration-responsive element-binding protein 2B
TrEMBLA0A178V9200.0A0A178V920_ARATH; DREB2B
STRINGAT3G11020.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28741765
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11020.11e-170DRE/CRT-binding protein 2B
Publications ? help Back to Top
  1. Djafi N, et al.
    The Arabidopsis DREB2 genetic pathway is constitutively repressed by basal phosphoinositide-dependent phospholipase C coupled to diacylglycerol kinase.
    Front Plant Sci, 2013. 4: p. 307
    [PMID:23964284]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kim K, et al.
    Alleviation of salt stress by enterobacter sp. EJ01 in tomato and Arabidopsis is accompanied by up-regulation of conserved salinity responsive factors in plants.
    Mol. Cells, 2014. 37(2): p. 109-17
    [PMID:24598995]
  4. Miyazaki Y,Abe H,Takase T,Kobayashi M,Kiyosue T
    Overexpression of LOV KELCH protein 2 confers dehydration tolerance and is associated with enhanced expression of dehydration-inducible genes in Arabidopsis thaliana.
    Plant Cell Rep., 2015. 34(5): p. 843-52
    [PMID:25627253]
  5. Lee SY,Boon NJ,Webb AA,Tanaka RJ
    Synergistic Activation of RD29A Via Integration of Salinity Stress and Abscisic Acid in Arabidopsis thaliana.
    Plant Cell Physiol., 2016. 57(10): p. 2147-2160
    [PMID:27497445]