PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.29475s0005.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family B3
Protein Properties Length: 351aa    MW: 39747.3 Da    PI: 8.0953
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.29475s0005.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B342.41.2e-1321961089
                          HHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                    B3 10 vlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89
                           ++s+ l +p  f++++  g  +e++  ++l++  s   W+v +  ++++    lt+GW++F+ +++L++gD+vvF++dg+  
  Araha.29475s0005.1.p 21 GFQSH-LNIPMAFFSRYidGTTNESNAVVKLRSnASDINWQVMI--EGRR----LTQGWQKFATSHDLRVGDIVVFRHDGDLL 96
                          55666.99**********8667778889999996777*******..8888....***********************887533 PP
2B359.94.4e-19145239398
                           EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                    B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                            + +++++l++++l+lp++f++++g+ +++  +++l +e+g+ W++ ++++k++   +++++GW++F+ ang +++ +++Fkl++ + +
  Araha.29475s0005.1.p 145 ITRVTASNLNKDILYLPRDFLRSNGLMNRQ-CEIILLNEDGKPWTLFMTHEKSRFDrVYIRSGWRSFCLANGKRANSVLTFKLVQ-TAT 231
                           56679999****************888655.5****************885555445**************************98.788 PP

                           ..EEEEE- CS
                    B3  91 elvvkvfr 98 
                           ++v+++++
  Araha.29475s0005.1.p 232 TPVLQLCS 239
                           89999987 PP
3B345.21.7e-14249347199
                           EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.. CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.. 87 
                           f++ ++++++lk++ l+lp +f++++g++++e  ++tl d+ g + +  l  + + gr+ l+k W+eF++  ++k+g+++ ++l+++  
  Araha.29475s0005.1.p 249 FLTLTLTPYNLKNDKLCLPVTFVKANGIENAE--KITLVDRYGIKRTTSLELEDGYGRMRLGKEWREFCEVSEVKTGESFKLELIKEgk 335
                           6778899*******************988666..7********666666666999999*************************995445 PP

                           SEE..EEEEE-S CS
                    B3  88 sefelvvkvfrk 99 
                           +++++++k+++k
  Araha.29475s0005.1.p 336 DTATPLLKFCSK 347
                           788899999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.9E-195115IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-187107IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.33511105IPR003340B3 DNA binding domain
CDDcd100173.14E-1412100No hitNo description
SMARTSM010193.6E-1714105IPR003340B3 DNA binding domain
PfamPF023624.4E-92594IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.0E-20138240IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-20139240IPR015300DNA-binding pseudobarrel domain
CDDcd100175.18E-20143239No hitNo description
PROSITE profilePS5086313.267143240IPR003340B3 DNA binding domain
SMARTSM010195.4E-25143241IPR003340B3 DNA binding domain
PfamPF023622.6E-17144239IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.3E-16244346IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.75E-15245337IPR015300DNA-binding pseudobarrel domain
CDDcd100174.95E-11248334No hitNo description
PROSITE profilePS5086310.447249347IPR003340B3 DNA binding domain
PfamPF023622.3E-13249347IPR003340B3 DNA binding domain
SMARTSM010192.2E-21249348IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MENVPASSPT KPHFFQPLLP GFQSHLNIPM AFFSRYIDGT TNESNAVVKL RSNASDINWQ  60
VMIEGRRLTQ GWQKFATSHD LRVGDIVVFR HDGDLLFHVT CLGPSCCEIQ YDDDVIQISS  120
DSDSDSKKNE NTTEGGTSSD HSCFITRVTA SNLNKDILYL PRDFLRSNGL MNRQCEIILL  180
NEDGKPWTLF MTHEKSRFDR VYIRSGWRSF CLANGKRANS VLTFKLVQTA TTPVLQLCSS  240
LRPTSQNRFL TLTLTPYNLK NDKLCLPVTF VKANGIENAE KITLVDRYGI KRTTSLELED  300
GYGRMRLGKE WREFCEVSEV KTGESFKLEL IKEGKDTATP LLKFCSKVFP *
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.29475s0005.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010488930.10.0PREDICTED: B3 domain-containing protein REM10-like
TrEMBLD7L9U10.0D7L9U1_ARALL; Uncharacterized protein
STRINGfgenesh1_pm.C_scaffold_30009200.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31680.11e-95B3 family protein