PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.29531s0001.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family Dof
Protein Properties Length: 249aa    MW: 27577.8 Da    PI: 9.7493
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.29531s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof115.42.4e-363895360
                zf-Dof  3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60
                          +  lkcprCds ntkfCyynnyslsqPr++Ck+CrryWt+GGalrnvP+Gg++r+++k
  Araha.29531s0001.1.p 38 QPVLKCPRCDSVNTKFCYYNNYSLSQPRHYCKNCRRYWTRGGALRNVPIGGSTRNKNK 95
                          56789*************************************************8876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074784.0E-303695IPR003851Zinc finger, Dof-type
PfamPF027015.9E-324095IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.2484195IPR003851Zinc finger, Dof-type
PROSITE patternPS0136104379IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010227Biological Processfloral organ abscission
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MMTSSHQSNT TGFKPRRIKT TAKPPRQINN KEPSTATQPV LKCPRCDSVN TKFCYYNNYS  60
LSQPRHYCKN CRRYWTRGGA LRNVPIGGST RNKNKPCSLH VISSPHLFSN VTSSSSHELV  120
RNHPSTAMMM RSSGGFSGYM FPLDPNYNLA SSSIESLSSF NQDLHQKLQQ QRLVTSMFLQ  180
DSLPVNQKPV MFQNVELIPP STATTDWVFD RSATGGEGGA TSGNHEDNGD GEGNLGNWYH  240
NANNNALL*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Involved in the negative regulation of floral organ abscission by binding to the typical DOF 5'-AAAG-3' sequences in the promoter of ADPG2/PGAZAT, and by down-regulating its expression. ADPG2/PGAZAT is an abscission-related and cell wall hydrolyzing polygalacturonase. May act through the interaction with ZFP2, an abscission-related transcription factor. {ECO:0000269|PubMed:20466844}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00478DAPTransfer from AT4G38000Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.29531s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2286130.0AK228613.1 Arabidopsis thaliana mRNA for Dof zinc finger protein - like, complete cds, clone: RAFL15-43-I22.
GenBankAL0355380.0AL035538.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F20D10 (ESSA project).
GenBankAL1615920.0AL161592.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 88.
GenBankBT0057670.0BT005767.1 Arabidopsis thaliana clone RAFL15-43-I22 (R20996) putative Dof zinc finger protein (At4g38000) mRNA, complete cds.
GenBankBT0060920.0BT006092.1 Arabidopsis thaliana clone U20996 putative Dof zinc finger protein (At4g38000) mRNA, complete cds.
GenBankCP0026870.0CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020874588.11e-173dof zinc finger protein DOF4.7
SwissprotQ84K521e-165DOF47_ARATH; Dof zinc finger protein DOF4.7
TrEMBLD7M9L31e-172D7M9L3_ARALL; Dof-type zinc finger domain-containing protein
STRINGfgenesh2_kg.7__248__AT4G38000.11e-173(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM152861518
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38000.11e-146DNA binding with one finger 4.7