PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araha.30146s0002.2.p

Organism

Arabidopsis halleri

Taxonomic ID

81970

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

Dof

Protein Properties

Length: 325aa MW: 34788.2 Da PI: 9.752

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araha.30146s0002.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.7	6.1e-39	77	136	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 e alkcprCds+ntkfCy+nny+l+qPr+fCkaCrryWt+GGalrnvPvGgg+r+nkk + Araha.30146s0002.2.p 77 EGALKCPRCDSANTKFCYFNNYNLTQPRHFCKACRRYWTRGGALRNVPVGGGCRRNKKGK 136 5689****************************************************9865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-37	61	131	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.5E-32	79	134	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.683	80	134	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	82	118	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 325 aa Download sequence Send to blast
MSANSNNHPN HPHHHQLQEN GGLVSGHHQV LSHHFPQNPN PNHHHVDTAA AATVDPSSLN 60 GQAAERARLA KNSQPPEGAL KCPRCDSANT KFCYFNNYNL TQPRHFCKAC RRYWTRGGAL 120 RNVPVGGGCR RNKKGKSGNS KSSSSSQNKQ STSMVNATIP TTTSNVQLQT NSQFPFLPDL 180 QNLTQLGGIG LNLAAINGNN GGNGNTSSSF LNELGFFHGG NTSGSVMGNN NNENNIMTSL 240 GSASHFALFD RTMGLYNFPN EGNMGLSFIG ASRVSQTAQV KMEDNHLGSI NRPVSGMTSP 300 GNQSNQYWTG QSLPGSSSND HHLM*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00281	DAP	Transfer from AT2G28810	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araha.30146s0002.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC005727	0.0	AC005727.3 Arabidopsis thaliana chromosome 2 clone F8N16 map mi54, complete sequence.
GenBank	BT032877	0.0	BT032877.1 Arabidopsis thaliana unknown protein (At2g28810) mRNA, complete cds.
GenBank	CP002685	0.0	CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001189627.1	0.0	Dof-type zinc finger DNA-binding family protein
Swissprot	Q9ZV33	0.0	DOF22_ARATH; Dof zinc finger protein DOF2.2
TrEMBL	F4IJM6	0.0	F4IJM6_ARATH; Dof-type zinc finger DNA-binding family protein
STRING	AT2G28810.1	0.0	(Arabidopsis thaliana)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28810.2	1e-153	Dof family protein

Link Out ? help Back to Top
Phytozome	Araha.30146s0002.2.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]