PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.3034s0046.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family NAC
Protein Properties Length: 353aa    MW: 38733.6 Da    PI: 8.6898
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.3034s0046.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1739.1e-5461331128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          lppGfrFhPtdeelvv+yLk+k+++ +l++  +i+evd+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk
  Araha.3034s0046.1.p   6 LPPGFRFHPTDEELVVHYLKRKAASAPLPV-AIIAEVDLYKFDPWELPAKASFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDK 94 
                          79****************************.88***************999999************************************ PP

                  NAM  91 evlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          +vl++ ++++vg+kk Lvfy+g+ pkg+k+dW+mheyrl
  Araha.3034s0046.1.p  95 PVLASdGNQKVGVKKALVFYSGKPPKGVKSDWIMHEYRL 133
                          ***9967788***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.8E-653167IPR003441NAC domain
PROSITE profilePS5100562.1236167IPR003441NAC domain
PfamPF023656.9E-287133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009753Biological Processresponse to jasmonic acid
GO:0045995Biological Processregulation of embryonic development
GO:0048317Biological Processseed morphogenesis
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
PPQPNLPPGF RFHPTDEELV VHYLKRKAAS APLPVAIIAE VDLYKFDPWE LPAKASFGEQ  60
EWYFFSPRDR KYPNGARPNR AATSGYWKAT GTDKPVLASD GNQKVGVKKA LVFYSGKPPK  120
GVKSDWIMHE YRLIENKPNN RPPGCDFGNK KNSLRLDDWV LCRIYKKNNA SRHVDNDKDH  180
DMIDYIFRKI PPSLSMAAAA TGLHHHHHNV SRSMNFFPGK FSGGGYGIFS DGGNTSLYDG  240
GGMINNIGTD SVGHDNNADV VGLNPASSSG PMMMASLKRA LPVPYWPVAE EEQDASPSKR  300
FHGGGGGGDC SNMSSSMMEE TPPLMQQQGG VLGDGLFRTT SYQLPGLNWY SS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-74317214170NO APICAL MERISTEM PROTEIN
1ut4_B3e-74317214170NO APICAL MERISTEM PROTEIN
1ut7_A3e-74317214170NO APICAL MERISTEM PROTEIN
1ut7_B3e-74317214170NO APICAL MERISTEM PROTEIN
3swm_A3e-74317217173NAC domain-containing protein 19
3swm_B3e-74317217173NAC domain-containing protein 19
3swm_C3e-74317217173NAC domain-containing protein 19
3swm_D3e-74317217173NAC domain-containing protein 19
3swp_A3e-74317217173NAC domain-containing protein 19
3swp_B3e-74317217173NAC domain-containing protein 19
3swp_C3e-74317217173NAC domain-containing protein 19
3swp_D3e-74317217173NAC domain-containing protein 19
4dul_A3e-74317214170NAC domain-containing protein 19
4dul_B3e-74317214170NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family (Probable). Together with NAC018/NARS2, regulates embryogenesis by regulating the development and degeneration of ovule integuments, a process required for intertissue communication between the embryo and the maternal integument (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00361DAPTransfer from AT3G15510Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.3034s0046.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By Jasmonic acid (JA). {ECO:0000269|PubMed:16805732}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0490710.0AB049071.1 Arabidopsis thaliana AtNAC2 mRNA, complete cds.
GenBankBT0040790.0BT004079.1 Arabidopsis thaliana clone RAFL15-22-L08 (R20756) putative jasmonic acid regulatory protein (At3g15510) mRNA, complete cds.
GenBankBT0050440.0BT005044.1 Arabidopsis thaliana clone U20756 putative jasmonic acid regulatory protein (At3g15510) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020888633.10.0NAC transcription factor 56
SwissprotQ9LD440.0NAC56_ARATH; NAC transcription factor 56
TrEMBLD7L4U40.0D7L4U4_ARALL; ATNAC2
STRINGfgenesh2_kg.3__1698__AT3G15510.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19028276
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15510.10.0NAC domain containing protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]