PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.30679s0001.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family GRF
Protein Properties Length: 479aa    MW: 52446.9 Da    PI: 9.6762
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.30679s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC78.75.5e-25157200144
                   WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                           d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e
  Araha.30679s0001.1.p 157 DPEPGRCRRTDGKKWRCSRDAVPDQKYCERHINRGRHRSRKPVE 200
                           79***************************************998 PP
2QLQ53.66.9e-1993129137
                   QLQ   1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                           ++FT +Q+++L++Q+l+yKy+ an+PvP+ Ll  i+k
  Araha.30679s0001.1.p  93 GPFTLTQWAELEQQALIYKYITANVPVPSSLLISIKK 129
                           59******************************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.6E-1193129IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088804.8E-1394127IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166621.38194129IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.77157201IPR014977WRC domain
PfamPF088793.0E-21158200IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0048364Biological Processroot development
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 479 aa     Download sequence    Send to blast
MSFQQGIPLM RSASPLSSDS RRQEQMLSFS DKPEALDFSK YVGLDNSSNN KNSPSPFLHQ  60
IPPPSYFRSS GGYGSGGMMM NMSMQANFTG VKGPFTLTQW AELEQQALIY KYITANVPVP  120
SSLLISIKKS FYPYGSLPPS SFGWGTFHLG FAGGNMDPEP GRCRRTDGKK WRCSRDAVPD  180
QKYCERHINR GRHRSRKPVE VQSGQNQTAA AASKAVVTPQ QPVVTDNTNR SNARGSTNRS  240
LAIGGQYINP STDSLPNNRV RNPQGVSIYP STISLQPKES PITQQKHRNN NNNNNNNNPF  300
EFGHISSDSL LNPNSAKTYG SSYLDFSSNQ DKHSGNHNHS SWPEELKSDW TQLSMSIPIA  360
SSSPSSTHNN NNNAQDKTTL SPLRLSRELD LSIQTEETAL EPAVKKVNTW IPISWGNSLG  420
GPLGEVLNST TNSPTLGSSP TGVLQKSTFC SLSNNSSVSS PIAENNNRNN GDYFHYTT*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. {ECO:0000269|PubMed:12974814, ECO:0000269|PubMed:15326298, ECO:0000269|PubMed:20023165, ECO:0000269|PubMed:21036927}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.30679s0001.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). {ECO:0000269|PubMed:15200956, ECO:0000269|PubMed:19453503, ECO:0000269|PubMed:20023165}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4937260.0AB493726.1 Arabidopsis thaliana At4g37740 mRNA for hypothetical protein, partial cds, clone: RAAt4g37740.
GenBankAK1764320.0AK176432.1 Arabidopsis thaliana mRNA for transcription activator (GRL2), complete cds, clone: RAFL24-18-E23.
GenBankAY1026350.0AY102635.1 Arabidopsis thaliana transcription activator (GRF2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020875498.10.0growth-regulating factor 2
SwissprotQ8L8A80.0GRF2_ARATH; Growth-regulating factor 2
TrEMBLA0A178UXW80.0A0A178UXW8_ARATH; GRF2
STRINGAT4G37740.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14542886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37740.10.0growth-regulating factor 2
Publications ? help Back to Top
  1. Casadevall R,Rodriguez RE,Debernardi JM,Palatnik JF,Casati P
    Repression of growth regulating factors by the microRNA396 inhibits cell proliferation by UV-B radiation in Arabidopsis leaves.
    Plant Cell, 2013. 25(9): p. 3570-83
    [PMID:24076976]
  2. Liu J,Rice JH,Chen N,Baum TJ,Hewezi T
    Synchronization of developmental processes and defense signaling by growth regulating transcription factors.
    PLoS ONE, 2014. 9(5): p. e98477
    [PMID:24875638]
  3. Cao Y,Han Y,Jin Q,Lin Y,Cai Y
    Comparative Genomic Analysis of the GRF Genes in Chinese Pear (Pyrus bretschneideri Rehd), Poplar (Populous), Grape (Vitis vinifera), Arabidopsis and Rice (Oryza sativa).
    Front Plant Sci, 2016. 7: p. 1750
    [PMID:27933074]