PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araha.30910s0001.1.p

Organism

Arabidopsis halleri

Taxonomic ID

81970

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

bHLH

Protein Properties

Length: 204aa MW: 23090.3 Da PI: 9.2088

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araha.30910s0001.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	24.9	3.6e-08	29	80	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 + h +Er+RR+++ f+ Lr+ lP ++K ++ + Av++Ik+ q Araha.30910s0001.1.p 29 KLLHRNIERQRRQEMAILFASLRSQLPLkY---IKGKRAMSDHVNGAVNFIKDTQ 80 567999********************77...999999**********9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	3.38E-7	25	84	No hit	No description
SuperFamily	SSF47459	6.54E-12	26	105	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	11.357	27	79	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.2E-5	29	80	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.8E-7	29	97	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 204 aa Download sequence Send to blast
MNPSNNPKKT RHQSDHMPQE RDEMKKEKKL LHRNIERQRR QEMAILFASL RSQLPLKYIK 60 GKRAMSDHVN GAVNFIKDTQ TRIKDLSSRR DELMREIGDP TSQTGSGSGS SRSEPASVMV 120 QSCVSGFEVV VSSSASGLEA WPLSRVLEVL HEQGLEVISS LTARVNERLM YTIQVEVNSF 180 DCFDLAWLQQ KLIEELVLSP TRH*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araha.30910s0001.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB493789	0.0	AB493789.1 Arabidopsis thaliana At5g51790 mRNA for hypothetical protein, partial cds, clone: RAAt5g51790.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001332480.1	1e-127	basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Refseq	NP_199992.2	1e-128	basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Swissprot	Q9FLI0	1e-129	BH120_ARATH; Transcription factor bHLH120
TrEMBL	A0A1P8BH39	1e-126	A0A1P8BH39_ARATH; Basic helix-loop-helix (BHLH) DNA-binding superfamily protein
STRING	AT5G51790.1	1e-127	(Arabidopsis thaliana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2968	27	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51790.1	1e-131	bHLH family protein

Link Out ? help Back to Top
Phytozome	Araha.30910s0001.1.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]