PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.30916s0004.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family WRKY
Protein Properties Length: 113aa    MW: 13347.3 Da    PI: 9.7839
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.30916s0004.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.32.4e-313290159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY  1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59
                          ldDgy+WrKYGqK+vk+s +pr YYrCt++ C+vkk+v+r +++ ++ve+tYeg Hnh+
  Araha.30916s0004.1.p 32 LDDGYRWRKYGQKSVKNSLYPRCYYRCTQHMCNVKKQVQRLSKEANIVETTYEGIHNHP 90
                          59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.9E-321790IPR003657WRKY domain
SuperFamilySSF1182908.11E-282491IPR003657WRKY domain
PROSITE profilePS5081127.3132792IPR003657WRKY domain
SMARTSM007743.5E-363291IPR003657WRKY domain
PfamPF031063.7E-253390IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 113 aa     Download sequence    Send to blast
MNGLLDSSRD ISHKKMKNPR YAFRTKSDAD ILDDGYRWRK YGQKSVKNSL YPRCYYRCTQ  60
HMCNVKKQVQ RLSKEANIVE TTYEGIHNHP CEELMQTLTP LLHQMQFLSK FN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-242289774Probable WRKY transcription factor 4
2lex_A3e-242289774Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00317DAPTransfer from AT2G46130Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.30916s0004.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1179311e-140AK117931.1 Arabidopsis thaliana At2g46130 mRNA for putative WRKY transcription factor (WRKY43), complete cds, clone: RAFL19-12-A14.
GenBankBT0047011e-140BT004701.1 Arabidopsis thaliana At2g46130 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002880217.16e-75probable WRKY transcription factor 43 isoform X1
SwissprotQ8GY116e-73WRK43_ARATH; Probable WRKY transcription factor 43
TrEMBLD7LDW51e-73D7LDW5_ARALL; WRKY DNA-binding protein 43
STRINGfgenesh1_pm.C_scaffold_40023232e-74(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50928154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46130.13e-75WRKY DNA-binding protein 43
Publications ? help Back to Top
  1. Geilen K,Heilmann M,Hillmer S,Böhmer M
    WRKY43 regulates polyunsaturated fatty acid content and seed germination under unfavourable growth conditions.
    Sci Rep, 2017. 7(1): p. 14235
    [PMID:29079824]