PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.3091s0005.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family B3
Protein Properties Length: 143aa    MW: 16874.3 Da    PI: 9.3066
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.3091s0005.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B336.86.8e-1224112583
                          -..-HHHHTT-EE--HHH.HTT...........---..--SEEEEEETTS...-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS
                   B3   5 ltpsdvlksgrlvlpkkfaeeh...........ggkkeesktltledesg...rsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 
                          l+ sd   +++l+lpk+ +e++           +     +++++++d ++    s++v+l  + + g+y+l+kGW+   +++gLk+gD +
  Araha.3091s0005.1.p  24 LSDSDLCYRAQLYLPKQEMEHFilpemendlvrK--LGAGVEVKVRDIDSvndDSYTVRL--KVRNGQYYLEKGWRLIKNDKGLKTGDHI 109
                          6678888999*********777998877766432..237899****9999999*******..999999********************87 PP

                          EEE CS
                   B3  81 vFk 83 
                           + 
  Araha.3091s0005.1.p 110 GLF 112
                          665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010197.5E-1121128IPR003340B3 DNA binding domain
SuperFamilySSF1019362.75E-1323125IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.1E-1023115IPR015300DNA-binding pseudobarrel domain
CDDcd100171.05E-1424125No hitNo description
PfamPF023621.1E-825122IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    Send to blast
MAKNNDINLE LSLSQYVEDD LWKLSDSDLC YRAQLYLPKQ EMEHFILPEM ENDLVRKLGA  60
GVEVKVRDID SVNDDSYTVR LKVRNGQYYL EKGWRLIKND KGLKTGDHIG LFWDKLTGEF  120
KFKHFESKSI VKRVLLRHRR RN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.3091s0005.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4934451e-110AB493445.1 Arabidopsis thaliana At1g10455 gene for hypothetical protein, partial cds, clone: RAAt1g10455.
GenBankAC0070671e-110AC007067.4 Genomic sequence for Arabidopsis thaliana BAC T10O24 from Chromosome 1, complete sequence.
GenBankAF1705501e-110AF170550.1 Arabidopsis thaliana germin-like protein 7 (GLP7) gene, complete cds.
GenBankCP0026841e-110CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002889808.16e-90B3 domain-containing protein At1g10455
SwissprotQ9XIK51e-70Y1045_ARATH; B3 domain-containing protein At1g10455
TrEMBLD7KKR31e-88D7KKR3_ARALL; Uncharacterized protein
STRINGscaffold_101108.12e-89(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1992934
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08985.13e-08B3 family protein